{ "type": "genome", "identifier": "GCF_015690345.1", "organism": "Plantactinospora alkalitolerans", "title": "Plantactinospora alkalitolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Salamanca", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015690345.1", "bioproject": "PRJNA224116", "biosample": "SAMN16810907", "wgs_master": "JADPUN000000000.1", "refseq_category": "reference genome", "taxid": "2789879", "species_taxid": "2789879", "organism_name": "Plantactinospora alkalitolerans", "infraspecific_name": "strain=S1510", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/25", "asm_name": "ASM1569034v1", "asm_submitter": "University of Salamanca", "gbrs_paired_asm": "GCA_015690345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/690/345/GCF_015690345.1_ASM1569034v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9219182", "genome_size_ungapped": "9219182", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "441", "contig_count": "441", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015690345.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "8624", "protein_coding_gene_count": "8223", "non_coding_gene_count": "112", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-25", "dateModified": "2020-11-25", "datePublished": "2020-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Plantactinospora alkalitolerans" ], "sample_taxid": [ "2789879" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey: Melet river offshore" ], "sample_host_location_id": [], "data_size": "2.509 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 6.94, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9219182", "Number of Sequences": "441", "Longest Sequences (bp)": "159352", "N50 (bp)": "31205", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.5", "Number of CDSs": "8092", "Average Protein Length": "314.2", "Coding Ratio (%)": "82.7", "Number of rRNAs": "2", "Number of tRNAs": "116", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 81.1572, "matched_fragments": 917, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora deserti", "strain": "strain=13K206", "accession": "GCA_003236335.1", "taxid": 2070366, "species_taxid": 2070366, "relation_to_type": "type", "validated": true, "ani": 80.8375, "matched_fragments": 977, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora kangleipakensis", "strain": "strain=DSM 45612", "accession": "GCA_004217615.1", "taxid": 1077942, "species_taxid": 1077942, "relation_to_type": "type", "validated": true, "ani": 80.7791, "matched_fragments": 1175, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inositola", "strain": "strain=DSM 43819", "accession": "GCA_900090285.1", "taxid": 47865, "species_taxid": 47865, "relation_to_type": "type", "validated": true, "ani": 80.6882, "matched_fragments": 1149, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rhizosphaerae", "strain": "strain=DSM 45431", "accession": "GCA_900091465.1", "taxid": 568872, "species_taxid": 568872, "relation_to_type": "type", "validated": true, "ani": 80.6795, "matched_fragments": 1106, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora purpureochromogenes", "strain": "strain=DSM 43821", "accession": "GCA_900091515.1", "taxid": 47872, "species_taxid": 47872, "relation_to_type": "type", "validated": true, "ani": 80.6571, "matched_fragments": 1139, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inyonensis", "strain": "strain=DSM 46123", "accession": "GCA_900091415.1", "taxid": 47866, "species_taxid": 47866, "relation_to_type": "type", "validated": true, "ani": 80.5801, "matched_fragments": 1006, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora fulviviridis", "strain": "strain=JCM 3259", "accession": "GCA_014648395.1", "taxid": 47860, "species_taxid": 47860, "relation_to_type": "type", "validated": true, "ani": 80.5748, "matched_fragments": 1198, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora cremea", "strain": "strain=DSM 45599", "accession": "GCA_900143515.1", "taxid": 709881, "species_taxid": 709881, "relation_to_type": "type", "validated": true, "ani": 80.554, "matched_fragments": 1195, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora polyrhachis", "strain": "strain=DSM 45886", "accession": "GCA_014203835.1", "taxid": 1282883, "species_taxid": 1282883, "relation_to_type": "type", "validated": true, "ani": 80.5525, "matched_fragments": 1024, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora narathiwatensis", "strain": "strain=DSM 45248", "accession": "GCA_900089605.1", "taxid": 299146, "species_taxid": 299146, "relation_to_type": "type", "validated": true, "ani": 80.5375, "matched_fragments": 1123, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 80.5162, "matched_fragments": 1062, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora orduensis", "strain": "strain=S2509", "accession": "GCA_006228125.1", "taxid": 1420891, "species_taxid": 1420891, "relation_to_type": "type", "validated": true, "ani": 80.5062, "matched_fragments": 1115, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora 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"GCA_003264365.1", "taxid": 709876, "species_taxid": 709876, "relation_to_type": "type", "validated": true, "ani": 80.4025, "matched_fragments": 1158, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora violae", "strain": "strain=DSM 45888", "accession": "GCA_004217135.1", "taxid": 1278207, "species_taxid": 1278207, "relation_to_type": "type", "validated": true, "ani": 80.3773, "matched_fragments": 1189, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ureilytica", "strain": "strain=DSM 101692", "accession": "GCA_015751765.1", "taxid": 709868, "species_taxid": 709868, "relation_to_type": "type", "validated": true, "ani": 80.3727, "matched_fragments": 1202, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=NRRL B-24793", "accession": "GCA_001507315.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 80.3676, "matched_fragments": 1050, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora pallida", "strain": "strain=DSM 43817", "accession": "GCA_900090325.1", "taxid": 145854, "species_taxid": 145854, "relation_to_type": "type", "validated": true, "ani": 80.3616, "matched_fragments": 1116, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora yangpuensis", "strain": "strain=CGMCC 4.5736", "accession": "GCA_014645775.1", "taxid": 683228, "species_taxid": 683228, "relation_to_type": "type", "validated": true, "ani": 80.357, "matched_fragments": 1062, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora krabiensis", "strain": "strain=DSM 45344", "accession": "GCA_900091425.1", "taxid": 307121, "species_taxid": 307121, "relation_to_type": "type", "validated": true, "ani": 80.3308, "matched_fragments": 1203, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 80.314, "matched_fragments": 1162, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora yangpuensis", "strain": "strain=DSM 45577", "accession": "GCA_900091615.1", "taxid": 683228, "species_taxid": 683228, "relation_to_type": "type", "validated": true, "ani": 80.3062, "matched_fragments": 1073, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chalcea", "strain": "strain=DSM 43026", "accession": "GCA_002926165.1", "taxid": 1874, "species_taxid": 1874, "relation_to_type": "type", "validated": true, "ani": 80.2769, "matched_fragments": 1119, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=AB-18-032", "accession": "GCA_000204155.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 80.2631, "matched_fragments": 1081, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sediminicola", "strain": "strain=DSM 45794", "accession": "GCA_900089585.1", "taxid": 946078, "species_taxid": 946078, "relation_to_type": "type", "validated": true, "ani": 80.2556, "matched_fragments": 1160, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora taraxaci", "strain": "strain=DSM 45885", "accession": "GCA_007830095.1", "taxid": 1316803, "species_taxid": 1316803, "relation_to_type": "type", "validated": true, "ani": 80.229, "matched_fragments": 1182, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora musae", "strain": "strain=MS1-9", "accession": "GCA_003626635.1", "taxid": 1894970, "species_taxid": 1894970, "relation_to_type": "type", "validated": true, "ani": 80.1677, "matched_fragments": 1154, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chokoriensis", "strain": "strain=DSM 45160", "accession": "GCA_900091505.1", "taxid": 356851, "species_taxid": 356851, "relation_to_type": "type", "validated": true, "ani": 80.1647, "matched_fragments": 1176, "total_fragments": 2854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora mooreana", "strain": "strain=CNT-150", "accession": "GCA_000514435.1", "taxid": 999545, "species_taxid": 999545, "relation_to_type": "type", "validated": true, "ani": 79.2862, "matched_fragments": 702, "total_fragments": 2854, "ani_threshold": 95, "status": 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