{ "type": "genome", "identifier": "GCF_015690355.1", "organism": "Streptacidiphilus fuscans", "title": "Streptacidiphilus fuscans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015690355.1", "bioproject": "PRJNA224116", "biosample": "SAMN16746852", "wgs_master": "JADPRT000000000.1", "refseq_category": "reference genome", "taxid": "2789292", "species_taxid": "2789292", "organism_name": "Streptacidiphilus fuscans", "infraspecific_name": "strain=NEAU-YB345", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/25", "asm_name": "ASM1569035v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_015690355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/690/355/GCF_015690355.1_ASM1569035v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8577691", "genome_size_ungapped": "8577511", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015690355.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "7798", "protein_coding_gene_count": "7617", "non_coding_gene_count": "94", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-25", "dateModified": "2020-11-25", "datePublished": "2020-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptacidiphilus fuscans" ], "sample_taxid": [ "2789292" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Mudanjiang" ], "sample_host_location_id": [], "data_size": "2.302 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8577691", "Number of Sequences": "38", "Longest Sequences (bp)": "785434", "N50 (bp)": "431557", "Gap Ratio (%)": "0.002098", "GCcontent (%)": "71.2", "Number of CDSs": "7851", "Average Protein Length": "322.8", "Coding Ratio (%)": "88.6", "Number of rRNAs": "4", "Number of tRNAs": "88", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptacidiphilus fuscans", "strain": "strain=NEAU-YB345", "accession": "GCA_015690355.1", "taxid": 2789292, "species_taxid": 2789292, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus neutrinimicus", "strain": "strain=NBRC 100921", "accession": "GCA_000787815.1", "taxid": 105420, "species_taxid": 105420, "relation_to_type": "type", "validated": true, "ani": 84.4681, "matched_fragments": 1643, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus melanogenes", "strain": "strain=NBRC 103184", "accession": "GCA_000787835.1", "taxid": 411235, "species_taxid": 411235, "relation_to_type": "type", "validated": true, "ani": 84.4345, "matched_fragments": 1712, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus jiangxiensis", "strain": "strain=CGMCC 4.1857", "accession": "GCA_900109465.1", "taxid": 235985, "species_taxid": 235985, "relation_to_type": "type", "validated": true, "ani": 84.3145, "matched_fragments": 1741, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus jiangxiensis", "strain": "strain=NBRC 100920", "accession": "GCA_000787795.1", "taxid": 235985, "species_taxid": 235985, "relation_to_type": "type", "validated": true, "ani": 84.1953, "matched_fragments": 1748, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus albus", "strain": "strain=NBRC 100918", "accession": "GCA_000787755.1", "taxid": 105425, "species_taxid": 105425, "relation_to_type": "type", "validated": true, "ani": 81.562, "matched_fragments": 1376, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus albus", "strain": "strain=JL83", "accession": "GCA_000744705.1", "taxid": 105425, "species_taxid": 105425, "relation_to_type": "type", "validated": true, "ani": 81.4702, "matched_fragments": 1424, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseocarneus", "strain": "strain=JCM 4580", "accession": "GCA_014655595.1", "taxid": 51201, "species_taxid": 51201, "relation_to_type": "type", "validated": true, "ani": 79.239, "matched_fragments": 922, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 78.8479, "matched_fragments": 890, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B1670", "accession": "GCA_021228125.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 78.8009, "matched_fragments": 941, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": 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