{ "type": "genome", "identifier": "GCF_015694465.1", "organism": "Microvirga alba", "title": "Microvirga alba", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015694465.1", "bioproject": "PRJNA224116", "biosample": "SAMN16833214", "wgs_master": "JADQDO000000000.1", "refseq_category": "reference genome", "taxid": "2791025", "species_taxid": "2791025", "organism_name": "Microvirga alba", "infraspecific_name": "strain=BT350", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/29", "asm_name": "ASM1569446v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_015694465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/694/465/GCF_015694465.1_ASM1569446v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4424757", "genome_size_ungapped": "4424757", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015694465.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4146", "protein_coding_gene_count": "4033", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-29", "dateModified": "2020-11-29", "datePublished": "2020-11-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Microvirga alba" ], "sample_taxid": [ "2791025" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju Island" ], "sample_host_location_id": [], "data_size": "1.242 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4424757", "Number of Sequences": "25", "Longest Sequences (bp)": "974318", "N50 (bp)": "314254", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.9", "Number of CDSs": "4136", "Average Protein Length": "313.3", "Coding Ratio (%)": "87.9", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microvirga alba", "strain": "strain=BT350", "accession": "GCA_015694465.1", "taxid": 2791025, "species_taxid": 2791025, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1461, "total_fragments": 1463, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microvirga lenta", "strain": "strain=SM9", "accession": "GCA_020532555.1", "taxid": 2881337, "species_taxid": 2881337, "relation_to_type": "type", "validated": true, "ani": 81.6334, "matched_fragments": 715, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flocculans", "strain": "strain=ATCC BAA-817", "accession": "GCA_000518665.1", "taxid": 217168, "species_taxid": 217168, "relation_to_type": "type", "validated": true, "ani": 81.496, "matched_fragments": 668, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga roseola", "strain": "strain=SM2", "accession": "GCA_020866965.1", "taxid": 2883126, "species_taxid": 2883126, "relation_to_type": "type", "validated": true, "ani": 81.2986, "matched_fragments": 653, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga ossetica", "strain": "strain=V5/3M", "accession": "GCA_002741015.1", "taxid": 1882682, "species_taxid": 1882682, "relation_to_type": "type", "validated": true, "ani": 81.1825, "matched_fragments": 748, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga subterranea", "strain": "strain=DSM 14364", "accession": "GCA_003350535.1", "taxid": 186651, "species_taxid": 186651, "relation_to_type": "type", "validated": true, "ani": 81.171, "matched_fragments": 722, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga splendida", "strain": "strain=BT325", "accession": "GCA_016427565.1", "taxid": 2795727, "species_taxid": 2795727, "relation_to_type": "type", "validated": true, "ani": 81.1281, "matched_fragments": 692, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga zambiensis", "strain": "strain=WSM3693", "accession": "GCA_016735695.1", "taxid": 1402137, "species_taxid": 1402137, "relation_to_type": "type", "validated": true, "ani": 81.1265, "matched_fragments": 732, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga calopogonii", "strain": "strain=CCBAU 65841", "accession": "GCA_003347665.1", "taxid": 2078013, "species_taxid": 2078013, "relation_to_type": "type", "validated": true, "ani": 81.1179, "matched_fragments": 673, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga aerophila", "strain": "strain=DSM 21344", "accession": "GCA_003332305.1", "taxid": 670291, "species_taxid": 670291, "relation_to_type": "type", "validated": true, "ani": 81.0854, "matched_fragments": 631, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lotononidis", "strain": "strain=WSM3557", "accession": "GCA_000262405.1", "taxid": 864069, "species_taxid": 864069, "relation_to_type": "type", "validated": true, "ani": 81.0108, "matched_fragments": 708, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga aerophila", "strain": "strain=NBRC 106136", "accession": "GCA_007991675.1", "taxid": 670291, "species_taxid": 670291, "relation_to_type": "type", "validated": true, "ani": 80.9929, "matched_fragments": 622, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flavescens", "strain": "strain=c27j1", "accession": "GCA_003290125.1", "taxid": 2249811, "species_taxid": 2249811, "relation_to_type": "type", "validated": true, "ani": 80.9669, "matched_fragments": 637, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga pakistanensis", "strain": "strain=NCCP-1258", "accession": "GCA_004458765.1", "taxid": 1682650, "species_taxid": 1682650, "relation_to_type": "type", "validated": true, "ani": 80.811, "matched_fragments": 638, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga vignae", "strain": "strain=BR3299", "accession": "GCA_001017175.1", "taxid": 1225564, "species_taxid": 1225564, "relation_to_type": "type", "validated": true, "ani": 80.5946, "matched_fragments": 661, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 78.1461, "matched_fragments": 364, "total_fragments": 1463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 78.0373, "matched_fragments": 354, 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