{ "type": "genome", "identifier": "GCF_015694525.1", "organism": "Hymenobacter ruricola", "title": "Hymenobacter ruricola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015694525.1", "bioproject": "PRJNA224116", "biosample": "SAMN16833192", "wgs_master": "JADQDM000000000.1", "refseq_category": "reference genome", "taxid": "2791023", "species_taxid": "2791023", "organism_name": "Hymenobacter ruricola", "infraspecific_name": "strain=BT662", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/29", "asm_name": "ASM1569452v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_015694525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/694/525/GCF_015694525.1_ASM1569452v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5964541", "genome_size_ungapped": "5964541", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015694525.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5000", "protein_coding_gene_count": "4924", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-29", "dateModified": "2020-11-29", "datePublished": "2020-11-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter ruricola" ], "sample_taxid": [ "2791023" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Wonju" ], "sample_host_location_id": [], "data_size": "1.650 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.61, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5964541", "Number of Sequences": "30", "Longest Sequences (bp)": "947051", "N50 (bp)": "331308", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "4970", "Average Protein Length": "349.2", "Coding Ratio (%)": "87.3", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter ruricola", "strain": "strain=BT662", "accession": "GCA_015694525.1", "taxid": 2791023, "species_taxid": 2791023, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1970, "total_fragments": 1972, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 88.0101, "matched_fragments": 1372, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter properus", "strain": "strain=BT439", "accession": "GCA_015694735.1", "taxid": 2791026, "species_taxid": 2791026, "relation_to_type": "type", "validated": true, "ani": 85.9201, "matched_fragments": 1412, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rubidus", "strain": "strain=DG7B", "accession": "GCA_016734815.1", "taxid": 1441626, "species_taxid": 1441626, "relation_to_type": "type", "validated": true, "ani": 85.0772, "matched_fragments": 1283, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terricola", "strain": "strain=3F2", "accession": "GCA_017921975.2", "taxid": 2819236, "species_taxid": 2819236, "relation_to_type": "type", "validated": true, "ani": 84.6297, "matched_fragments": 1293, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter artigasi", "strain": "strain=1B", "accession": "GCA_012275535.1", "taxid": 2719616, "species_taxid": 2719616, "relation_to_type": "type", "validated": true, "ani": 84.5122, "matched_fragments": 1210, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter sedentarius", "strain": "strain=DG5B", "accession": "GCA_001507645.1", "taxid": 1411621, "species_taxid": 1411621, "relation_to_type": "type", "validated": true, "ani": 84.0792, "matched_fragments": 1099, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter lapidarius", "strain": "strain=CCM 8643", "accession": "GCA_001816145.1", "taxid": 1908237, "species_taxid": 1908237, "relation_to_type": "type", "validated": true, "ani": 83.6687, "matched_fragments": 1033, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacialis", "strain": "strain=CCM 8648", "accession": "GCA_001816165.1", "taxid": 1908236, "species_taxid": 1908236, "relation_to_type": "type", "validated": true, "ani": 83.5858, "matched_fragments": 993, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter jeongseonensis", "strain": "strain=BT683", "accession": "GCA_015694725.1", "taxid": 2791027, "species_taxid": 2791027, "relation_to_type": "type", "validated": true, "ani": 82.8755, "matched_fragments": 1110, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter montanus", "strain": "strain=BT664", "accession": "GCA_014699115.1", "taxid": 2771359, "species_taxid": 2771359, "relation_to_type": "type", "validated": true, "ani": 81.7193, "matched_fragments": 989, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 79.1932, "matched_fragments": 752, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 79.1485, "matched_fragments": 764, "total_fragments": 1972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas populi", "strain": "strain=KCTC 42087", "accession": "GCA_017815515.1", "taxid": 1701758, "species_taxid": 1701758, "relation_to_type": "type", 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"num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016427455.1", "gtdb_species": "s__Hymenobacter sp016427455", "ani": 87.8462, "matched_fragments": 1412, "total_fragments": 1972, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.46", "min_intra_species_ani": "95.46", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015694735.1", "gtdb_species": "s__Hymenobacter properus", "ani": 85.9394, "matched_fragments": 1409, "total_fragments": 1972, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, 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