{
    "type": "genome",
    "identifier": "GCF_015698225.1",
    "organism": "Lactobacillus helveticus",
    "title": "Lactobacillus helveticus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Laboratory of Applied Microbiology, Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_015698225.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00212408",
        "wgs_master": "BLYW00000000.1",
        "refseq_category": "na",
        "taxid": "1587",
        "species_taxid": "1587",
        "organism_name": "Lactobacillus helveticus",
        "infraspecific_name": "strain=JCM 1120",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/11/13",
        "asm_name": "ASM1569822v1",
        "asm_submitter": "Laboratory of Applied Microbiology, Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture",
        "gbrs_paired_asm": "GCA_015698225.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/698/225/GCF_015698225.1_ASM1569822v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2117221",
        "genome_size_ungapped": "2117221",
        "gc_percent": "37.000000",
        "replicon_count": "0",
        "scaffold_count": "412",
        "contig_count": "412",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_015698225.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "2580",
        "protein_coding_gene_count": "2070",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-11-13",
    "dateModified": "2020-11-13",
    "datePublished": "2020-11-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactobacillus helveticus"
        ],
        "sample_taxid": [
            "1587"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.594 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2117221",
        "Number of Sequences": "412",
        "Longest Sequences (bp)": "73031",
        "N50 (bp)": "16663",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.9",
        "Number of CDSs": "2081",
        "Average Protein Length": "258.2",
        "Coding Ratio (%)": "76.1",
        "Number of rRNAs": "7",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Lactobacillus helveticus",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Lactobacillus helveticus",
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                "relation_to_type": "type",
                "validated": true,
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                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus helveticus",
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            },
            {
                "organism_name": "Lactobacillus gallinarum",
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                "species_taxid": 52242,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus kefiranofaciens subsp. kefirgranum",
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                "accession": "GCA_001434195.1",
                "taxid": 190906,
                "species_taxid": 267818,
                "relation_to_type": "type",
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                "matched_fragments": 344,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus ultunensis",
                "strain": "strain=DSM 16047",
                "accession": "GCA_001436305.1",
                "taxid": 227945,
                "species_taxid": 227945,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus kitasatonis",
                "strain": "strain=DSM 16761",
                "accession": "GCA_001434435.1",
                "taxid": 237446,
                "species_taxid": 237446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0091,
                "matched_fragments": 356,
                "total_fragments": 569,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus acidophilus",
                "strain": "strain=ATCC 4356",
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                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus intestinalis",
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                "accession": "GCA_024397795.1",
                "taxid": 151781,
                "species_taxid": 151781,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4885,
                "matched_fragments": 215,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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            {
                "accession": "GCF_000160855.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
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            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
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                "mean_intra_species_af": "0.88",
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            },
            {
                "accession": "GCF_900103655.1",
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            },
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                "accession": "GCF_002706375.1",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}