{ "type": "genome", "identifier": "GCF_015704865.1", "organism": "Actinoplanes aureus", "title": "Actinoplanes aureus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015704865.1", "bioproject": "PRJNA224116", "biosample": "SAMN16830298", "wgs_master": "JADQTO000000000.1", "refseq_category": "reference genome", "taxid": "2792083", "species_taxid": "2792083", "organism_name": "Actinoplanes aureus", "infraspecific_name": "strain=NEAU-A11", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/30", "asm_name": "ASM1570486v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_015704865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/704/865/GCF_015704865.1_ASM1570486v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10742306", "genome_size_ungapped": "10742096", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "109", "contig_count": "109", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015704865.1-RS_2024_09_08", "annotation_date": "2024-09-08", "total_gene_count": "9911", "protein_coding_gene_count": "9668", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-30", "dateModified": "2020-11-30", "datePublished": "2020-11-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes aureus" ], "sample_taxid": [ "2792083" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Ao Han Banner" 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"organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 83.6991, "matched_fragments": 1955, "total_fragments": 3525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=NBRC 12513", "accession": "GCA_016862255.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 83.6844, "matched_fragments": 1935, "total_fragments": 3525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=JCM 3061", "accession": "GCA_014647815.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 83.6547, "matched_fragments": 1964, "total_fragments": 3525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lobatus", "strain": 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"species_taxid": 35752, "relation_to_type": "type", "validated": true, "ani": 83.0692, "matched_fragments": 1974, "total_fragments": 3525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes ianthinogenes", "strain": "strain=NBRC 13996", "accession": "GCA_018324205.1", "taxid": 122358, "species_taxid": 122358, "relation_to_type": "type", "validated": true, "ani": 82.9415, "matched_fragments": 1909, "total_fragments": 3525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes ianthinogenes", "strain": "strain=JCM 3249", "accession": "GCA_014648375.1", "taxid": 122358, "species_taxid": 122358, "relation_to_type": "type", "validated": true, "ani": 82.9276, "matched_fragments": 1915, "total_fragments": 3525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes italicus", "strain": "strain=DSM 43146", "accession": "GCA_003001815.1", "taxid": 113567, "species_taxid": 113567, "relation_to_type": "type", "validated": true, "ani": 82.8726, "matched_fragments": 2091, "total_fragments": 3525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes regularis", "strain": "strain=DSM 43151", "accession": "GCA_900188005.1", "taxid": 52697, "species_taxid": 52697, "relation_to_type": "type", "validated": true, "ani": 82.6149, "matched_fragments": 1822, "total_fragments": 3525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes regularis", "strain": "strain=NBRC 12514", "accession": "GCA_016862355.1", "taxid": 52697, "species_taxid": 52697, "relation_to_type": "type", "validated": true, "ani": 82.6007, "matched_fragments": 1792, "total_fragments": 3525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes atraurantiacus", "strain": "strain=CGMCC 4.6857", "accession": "GCA_900215205.1", "taxid": 1036182, "species_taxid": 1036182, "relation_to_type": "type", "validated": true, "ani": 80.7036, 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3525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 78.6172, "matched_fragments": 1171, "total_fragments": 3525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium fulvum", "strain": "strain=NRRL B-16292", "accession": "GCA_025137375.1", "taxid": 53359, "species_taxid": 53359, "relation_to_type": "type", "validated": true, "ani": 77.3628, "matched_fragments": 1161, "total_fragments": 3525, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015704865.1", "gtdb_species": "s__Actinoplanes sp015704865", "ani": 100.0, "matched_fragments": 3513, "total_fragments": 3525, "gtdb_taxonomy": 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