{ "type": "genome", "identifier": "GCF_015710575.1", "organism": "Mycolicibacterium mengxianglii", "title": "Mycolicibacterium mengxianglii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015710575.1", "bioproject": "PRJNA224116", "biosample": "SAMN16862530", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2736649", "species_taxid": "2736649", "organism_name": "Mycolicibacterium mengxianglii", "infraspecific_name": "strain=Z-34", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/18", "asm_name": "ASM1571057v2", "asm_submitter": "National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr", "gbrs_paired_asm": "GCA_015710575.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/710/575/GCF_015710575.1_ASM1571057v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5962395", "genome_size_ungapped": "5962395", "gc_percent": "66.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015710575.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5726", "protein_coding_gene_count": "5545", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-18", "dateModified": "2020-12-18", "datePublished": "2020-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium mengxianglii" ], "sample_taxid": [ "2736649" ], "sample_host_organism": [ "no collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.641 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5962395", "Number of Sequences": "1", "Longest Sequences (bp)": "5962395", "N50 (bp)": "5962395", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.3", "Number of CDSs": "5701", "Average Protein Length": "318.7", "Coding Ratio (%)": "91.4", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium mengxianglii", "strain": "strain=Z-34", "accession": "GCA_015710575.2", "taxid": 2736649, "species_taxid": 2736649, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1986, "total_fragments": 1987, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium tokaiense", "strain": "strain=NCTC10821", "accession": "GCA_900453365.1", "taxid": 39695, "species_taxid": 39695, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3531, "matched_fragments": 1115, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium tokaiense", "strain": "strain=JCM 6373", "accession": "GCA_010725885.1", "taxid": 39695, "species_taxid": 39695, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3077, "matched_fragments": 1122, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_016313185.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 80.1389, "matched_fragments": 965, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_014893035.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 80.0876, "matched_fragments": 970, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vaccae", "strain": "strain=NBRC 14118", "accession": "GCA_001552715.1", "taxid": 1810, "species_taxid": 1810, "relation_to_type": "type", "validated": true, "ani": 80.0803, "matched_fragments": 879, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vaccae", "strain": "strain=95051", "accession": "GCA_001655245.1", "taxid": 1810, 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"validated": true, "ani": 79.8458, "matched_fragments": 874, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium confluentis", "strain": "strain=DSM 44017", "accession": "GCA_002102105.1", "taxid": 28047, "species_taxid": 28047, "relation_to_type": "type", "validated": true, "ani": 79.6887, "matched_fragments": 887, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium litorale", "strain": "strain=CGMCC 4.5724", "accession": "GCA_004366555.1", "taxid": 758802, "species_taxid": 758802, "relation_to_type": "type", "validated": true, "ani": 79.6568, "matched_fragments": 911, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium confluentis", "strain": "strain=JCM 13671", "accession": "GCA_010729895.1", "taxid": 28047, "species_taxid": 28047, "relation_to_type": "type", "validated": true, "ani": 79.6501, 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1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vinylchloridicum", "strain": "strain=CECT 8761", "accession": "GCA_013404075.1", "taxid": 2736928, "species_taxid": 2736928, "relation_to_type": "type", "validated": true, "ani": 79.1139, "matched_fragments": 795, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium neoaurum", "strain": "strain=DSM 44074", "accession": "GCA_005670605.1", "taxid": 1795, "species_taxid": 1795, "relation_to_type": "type", "validated": true, "ani": 79.0859, "matched_fragments": 722, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium neoaurum", "strain": "strain=ATCC 25795", "accession": "GCA_000691525.1", "taxid": 1795, "species_taxid": 1795, "relation_to_type": "type", "validated": true, "ani": 79.0712, "matched_fragments": 725, "total_fragments": 1987, "ani_threshold": 95, "status": 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