{ "type": "genome", "identifier": "GCF_015712105.2", "organism": "Pseudomonas chaetocerotis", "title": "Pseudomonas chaetocerotis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KU Leuven", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015712105.2", "bioproject": "PRJNA224116", "biosample": "SAMN15618151", "wgs_master": "JACFYX000000000.2", "refseq_category": "reference genome", "taxid": "2758695", "species_taxid": "2758695", "organism_name": "Pseudomonas chaetocerotis", "infraspecific_name": "strain=536", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/25", "asm_name": "536", "asm_submitter": "KU Leuven", "gbrs_paired_asm": "GCA_015712105.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/712/105/GCF_015712105.2_536", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5378009", "genome_size_ungapped": "5378009", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015712105.2-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "5146", "protein_coding_gene_count": "4987", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-25", "dateModified": "2021-09-25", "datePublished": "2021-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas chaetocerotis" ], "sample_taxid": [ "2758695" ], "sample_host_organism": [ "Chaetoceros calcitrans" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Leucate" ], 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"status": "below_threshold" }, { "organism_name": "Pseudomonas chengduensis", "strain": "strain=MBR", "accession": "GCA_017905455.1", "taxid": 489632, "species_taxid": 489632, "relation_to_type": "type", "validated": true, "ani": 92.458, "matched_fragments": 1434, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chengduensis", "strain": "strain=DSM 26382", "accession": "GCA_012986985.1", "taxid": 489632, "species_taxid": 489632, "relation_to_type": "type", "validated": true, "ani": 92.4567, "matched_fragments": 1458, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chengduensis", "strain": "strain=DSM 26382", "accession": "GCA_900102635.1", "taxid": 489632, "species_taxid": 489632, "relation_to_type": "type", "validated": true, "ani": 92.4356, "matched_fragments": 1448, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=JCM 15604", "accession": "GCA_900115695.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 92.3924, "matched_fragments": 1461, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sihuiensis", "strain": "strain=KCTC 32246", "accession": "GCA_900106015.1", "taxid": 1274359, "species_taxid": 1274359, "relation_to_type": "type", "validated": true, "ani": 92.2342, "matched_fragments": 1446, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=NBRC 102411", "accession": "GCA_002091495.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 91.7435, "matched_fragments": 1456, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=JCM 10630", "accession": "GCA_900101755.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 91.6963, "matched_fragments": 1466, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=NBRC 13583", "accession": "GCA_002091815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 90.7194, "matched_fragments": 1181, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=DSM 1045", "accession": "GCA_002197815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 90.7127, "matched_fragments": 1194, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas composti", "strain": "strain=CCUG 59231", "accession": "GCA_900115475.1", "taxid": 658457, "species_taxid": 658457, "relation_to_type": "type", "validated": true, "ani": 89.7449, "matched_fragments": 1390, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 89.0011, "matched_fragments": 1332, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 88.4598, "matched_fragments": 1330, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, 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"validated": true, "ani": 80.9646, "matched_fragments": 802, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas chloritidismutans", "strain": "strain=AW-1", "accession": "GCA_000495915.1", "taxid": 203192, "species_taxid": 203192, "relation_to_type": "type", "validated": true, "ani": 80.8874, "matched_fragments": 716, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas plecoglossicida", "strain": "strain=DSM 15088", "accession": "GCA_000688275.1", "taxid": 70775, "species_taxid": 70775, "relation_to_type": "suspected-type", "validated": true, "ani": 80.7788, "matched_fragments": 735, "total_fragments": 1770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 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