{
    "type": "genome",
    "identifier": "GCF_015732155.1",
    "organism": "Pectinatus sottacetonis",
    "title": "Pectinatus sottacetonis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Genedata",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_015732155.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12831184",
        "wgs_master": "WIQK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1002795",
        "species_taxid": "1002795",
        "organism_name": "Pectinatus sottacetonis",
        "infraspecific_name": "strain=MB620",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/03",
        "asm_name": "ASM1573215v1",
        "asm_submitter": "Genedata",
        "gbrs_paired_asm": "GCA_015732155.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/732/155/GCF_015732155.1_ASM1573215v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2691682",
        "genome_size_ungapped": "2691682",
        "gc_percent": "35.500000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_015732155.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "2543",
        "protein_coding_gene_count": "2433",
        "non_coding_gene_count": "74",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-03",
    "dateModified": "2020-12-03",
    "datePublished": "2020-12-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pectinatus sottacetonis"
        ],
        "sample_taxid": [
            "1002795"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.752 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2691682",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2625003",
        "N50 (bp)": "2625003",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.4",
        "Number of CDSs": "2473",
        "Average Protein Length": "310.4",
        "Coding Ratio (%)": "85.6",
        "Number of rRNAs": "12",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pectinatus sottacetonis",
                "strain": "strain=MB620",
                "accession": "GCA_015732155.1",
                "taxid": 1002795,
                "species_taxid": 1002795,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 896,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pectinatus brassicae",
                "strain": "strain=MB591",
                "accession": "GCA_015732205.1",
                "taxid": 862415,
                "species_taxid": 862415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4839,
                "matched_fragments": 295,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectinatus brassicae",
                "strain": "strain=DSM 24661",
                "accession": "GCA_014201835.1",
                "taxid": 862415,
                "species_taxid": 862415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.007,
                "matched_fragments": 274,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectinatus cerevisiiphilus",
                "strain": "strain=MB134",
                "accession": "GCA_015732175.1",
                "taxid": 86956,
                "species_taxid": 86956,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.811,
                "matched_fragments": 207,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectinatus cerevisiiphilus",
                "strain": "strain=DSM 20467",
                "accession": "GCA_004341685.1",
                "taxid": 86956,
                "species_taxid": 86956,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1348,
                "matched_fragments": 206,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectinatus frisingensis",
                "strain": "strain=MB174",
                "accession": "GCA_015732285.1",
                "taxid": 865,
                "species_taxid": 865,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0123,
                "matched_fragments": 214,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megamonas funiformis",
                "strain": "strain=JCM 14723",
                "accession": "GCA_010669225.1",
                "taxid": 437897,
                "species_taxid": 437897,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6084,
                "matched_fragments": 78,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megamonas funiformis",
                "strain": "strain=YIT 11815",
                "accession": "GCA_000245775.1",
                "taxid": 437897,
                "species_taxid": 437897,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9958,
                "matched_fragments": 71,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_015732155.1",
                "gtdb_species": "s__Pectinatus sottacetonis",
                "ani": 100.0,
                "matched_fragments": 895,
                "total_fragments": 897,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Pectinatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014201835.1",
                "gtdb_species": "s__Pectinatus brassicae",
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                "matched_fragments": 273,
                "total_fragments": 897,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Pectinatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015732185.1",
                "gtdb_species": "s__Pectinatus haikarae",
                "ani": 78.2756,
                "matched_fragments": 210,
                "total_fragments": 897,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Pectinatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004341685.1",
                "gtdb_species": "s__Pectinatus cerevisiiphilus",
                "ani": 78.1348,
                "matched_fragments": 206,
                "total_fragments": 897,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Pectinatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015732285.1",
                "gtdb_species": "s__Pectinatus frisingensis",
                "ani": 78.0464,
                "matched_fragments": 212,
                "total_fragments": 897,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Pectinatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.00",
                "min_intra_species_ani": "97.22",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_010669225.1",
                "gtdb_species": "s__Megamonas funiformis",
                "ani": 77.2322,
                "matched_fragments": 75,
                "total_fragments": 897,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Megamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "97.23",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 26,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 1.217,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 6.75,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pectinatus",
        "sottacetonis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}