{ "type": "genome", "identifier": "GCF_015751045.1", "organism": "Enterococcus lactis", "title": "Enterococcus lactis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northeast Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015751045.1", "bioproject": "PRJNA224116", "biosample": "SAMD00255145", "wgs_master": "BNJW00000000.1", "refseq_category": "na", "taxid": "357441", "species_taxid": "357441", "organism_name": "Enterococcus lactis", "infraspecific_name": "strain=CCM 8412", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/12", "asm_name": "ASM1575104v1", "asm_submitter": "Northeast Agricultural University", "gbrs_paired_asm": "GCA_015751045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/751/045/GCF_015751045.1_ASM1575104v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2867560", "genome_size_ungapped": "2867560", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "67", "contig_count": "67", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015751045.1-RS_2024_09_03", "annotation_date": "2024-09-03", "total_gene_count": "2841", "protein_coding_gene_count": "2633", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-12", "dateModified": "2020-11-12", "datePublished": "2020-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus lactis" ], "sample_taxid": [ "357441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "0.813 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2867560", "Number of Sequences": "67", "Longest Sequences (bp)": "229426", "N50 (bp)": "105941", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.1", "Number of CDSs": "2771", "Average Protein Length": "294.1", "Coding Ratio (%)": "85.3", "Number of rRNAs": "2", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus lactis", "strain": "strain=CCM 8412", "accession": "GCA_015751045.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 919, "total_fragments": 921, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus lactis", "strain": "strain=LMG 25958", "accession": "GCA_015904215.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 99.9852, "matched_fragments": 895, "total_fragments": 921, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus faecium", "strain": "strain=NCTC7171", "accession": "GCA_900447735.1", "taxid": 1352, "species_taxid": 1352, "relation_to_type": "type", "validated": true, "ani": 94.5127, "matched_fragments": 774, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecium", "strain": "strain=NBRC 100486", "accession": "GCA_001544255.1", "taxid": 1352, "species_taxid": 1352, "relation_to_type": "type", "validated": true, "ani": 94.384, "matched_fragments": 747, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus durans", "strain": "strain=FDAARGOS 1437", "accession": "GCA_019048325.1", "taxid": 53345, "species_taxid": 53345, "relation_to_type": "type", "validated": true, "ani": 81.8514, "matched_fragments": 435, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus durans", "strain": "strain=NBRC 100479", "accession": "GCA_001544215.1", "taxid": 53345, "species_taxid": 53345, "relation_to_type": "type", "validated": true, "ani": 81.8212, "matched_fragments": 416, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000271405.2", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 80.377, "matched_fragments": 377, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus thailandicus", "strain": "strain=NBRC 101867", "accession": "GCA_007989705.1", "taxid": 417368, "species_taxid": 417368, "relation_to_type": "type", "validated": true, "ani": 79.6652, "matched_fragments": 351, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus villorum", "strain": "strain=NBRC 100699", "accession": "GCA_007990225.1", "taxid": 112904, "species_taxid": 112904, "relation_to_type": "type", "validated": true, "ani": 79.6526, "matched_fragments": 359, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=DSM 4838", "accession": "GCA_002813755.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 79.5919, "matched_fragments": 375, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alishanensis", "strain": "strain=ALS3", "accession": "GCA_019218635.1", "taxid": 1303817, "species_taxid": 1303817, "relation_to_type": "type", "validated": true, "ani": 78.3394, "matched_fragments": 83, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus quebecensis", "strain": "strain=DSM 23327", "accession": "GCA_001886145.1", "taxid": 903983, "species_taxid": 903983, "relation_to_type": "type", "validated": true, "ani": 77.9083, "matched_fragments": 122, "total_fragments": 921, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015751045.1", "gtdb_species": "s__Enterococcus_B lactis", "ani": 100.0, "matched_fragments": 919, "total_fragments": 921, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.26", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", 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"-" }, { "accession": "GCF_011038845.1", "gtdb_species": "s__Enterococcus_B sp011038845", "ani": 81.7411, "matched_fragments": 545, "total_fragments": 921, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002947535.1", "gtdb_species": "s__Enterococcus_B mundtii_B", "ani": 80.4595, "matched_fragments": 377, "total_fragments": 921, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.82", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_000271405.2", 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