{ "type": "genome", "identifier": "GCF_015751905.1", "organism": "Longispora fulva", "title": "Longispora fulva", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015751905.1", "bioproject": "PRJNA224116", "biosample": "SAMN16773067", "wgs_master": "JADOUF000000000.1", "refseq_category": "reference genome", "taxid": "619741", "species_taxid": "619741", "organism_name": "Longispora fulva", "infraspecific_name": "strain=DSM 45356", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/04", "asm_name": "ASM1575190v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_015751905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/751/905/GCF_015751905.1_ASM1575190v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8676660", "genome_size_ungapped": "8676660", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015751905.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "8074", "protein_coding_gene_count": "7895", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-04", "dateModified": "2020-12-04", "datePublished": "2020-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Longispora fulva" ], "sample_taxid": [ "619741" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Fukushima,Ohnuma" ], "sample_host_location_id": [], "data_size": "2.326 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8676660", "Number of Sequences": "1", "Longest Sequences (bp)": "8676660", "N50 (bp)": "8676660", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.1", "Number of CDSs": "8155", "Average Protein Length": "321.3", "Coding Ratio (%)": "90.6", "Number of rRNAs": "11", "Number of tRNAs": "92", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Longispora fulva", "strain": "strain=DSM 45356", "accession": "GCA_015751905.1", "taxid": 619741, "species_taxid": 619741, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2890, "total_fragments": 2892, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Longispora fulva", "strain": "strain=NBRC 105670", "accession": "GCA_016862835.1", "taxid": 619741, "species_taxid": 619741, "relation_to_type": "type", "validated": true, "ani": 99.9791, "matched_fragments": 2840, "total_fragments": 2892, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Longispora albida", "strain": "strain=DSM 44784", "accession": "GCA_000379825.1", "taxid": 203523, "species_taxid": 203523, "relation_to_type": "type", "validated": true, "ani": 80.8837, "matched_fragments": 1191, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora jinlongensis", "strain": "strain=DSM 45876", "accession": "GCA_013410645.1", "taxid": 1287877, "species_taxid": 1287877, "relation_to_type": "type", "validated": true, "ani": 77.8054, "matched_fragments": 789, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora cremea", "strain": "strain=DSM 45599", "accession": "GCA_900143515.1", "taxid": 709881, "species_taxid": 709881, "relation_to_type": "type", "validated": true, "ani": 77.7491, "matched_fragments": 842, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora citrea", "strain": "strain=NBRC 14495", "accession": "GCA_016862615.1", "taxid": 53366, "species_taxid": 53366, "relation_to_type": "type", "validated": true, "ani": 77.6295, "matched_fragments": 967, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora vulcania", "strain": "strain=NEAU-JM1", "accession": "GCA_009720385.1", "taxid": 1460450, "species_taxid": 1460450, "relation_to_type": "type", "validated": true, "ani": 77.6113, "matched_fragments": 965, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora paridis", "strain": "strain=NEAU-CL2", "accession": "GCA_009720365.1", "taxid": 1617086, "species_taxid": 1617086, "relation_to_type": "type", "validated": true, "ani": 77.5718, "matched_fragments": 945, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans houttuyneae", "strain": "strain=NBRC 108639", "accession": "GCA_011764425.1", "taxid": 1076126, "species_taxid": 1076126, "relation_to_type": "type", "validated": true, "ani": 77.1576, "matched_fragments": 960, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=NBRC 12513", "accession": "GCA_016862255.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 77.0384, "matched_fragments": 870, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium siamense", "strain": "strain=NBRC 106093", "accession": "GCA_016862795.1", "taxid": 685454, "species_taxid": 685454, "relation_to_type": "type", "validated": true, "ani": 77.0264, "matched_fragments": 1108, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes italicus", "strain": "strain=NBRC 13911", "accession": "GCA_016862235.1", "taxid": 113567, "species_taxid": 113567, "relation_to_type": "type", "validated": true, "ani": 76.9704, "matched_fragments": 873, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes deccanensis", "strain": "strain=NBRC 13994", "accession": "GCA_016862115.1", "taxid": 113561, "species_taxid": 113561, "relation_to_type": "type", "validated": true, "ani": 76.9545, "matched_fragments": 924, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes italicus", "strain": "strain=DSM 43146", "accession": "GCA_003001815.1", "taxid": 113567, "species_taxid": 113567, "relation_to_type": "type", "validated": true, "ani": 76.948, "matched_fragments": 889, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allorhizocola rhizosphaerae", "strain": "strain=CPCC 204380", "accession": "GCA_003426775.1", "taxid": 1872709, "species_taxid": 1872709, "relation_to_type": "type", "validated": true, "ani": 76.7433, "matched_fragments": 554, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgisporangium ochraceum", "strain": "strain=NBRC 16418", "accession": "GCA_016863655.1", "taxid": 65505, "species_taxid": 65505, "relation_to_type": "type", "validated": true, "ani": 76.7348, "matched_fragments": 951, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgisporangium aurantiacum", "strain": "strain=NBRC 16421", "accession": "GCA_016863635.1", "taxid": 175570, "species_taxid": 175570, "relation_to_type": "type", "validated": true, "ani": 76.5577, "matched_fragments": 1043, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix texasensis", "strain": "strain=DSM 44231", "accession": "GCA_003752005.1", "taxid": 103734, "species_taxid": 103734, "relation_to_type": "type", "validated": true, "ani": 76.4245, "matched_fragments": 818, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermopolyspora flexuosa", "strain": "strain=DSM 43186", "accession": "GCA_006716785.1", "taxid": 103836, "species_taxid": 103836, "relation_to_type": "type", "validated": true, "ani": 76.2521, "matched_fragments": 574, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermopolyspora flexuosa", "strain": "strain=JCM 3056", "accession": "GCA_014647775.1", "taxid": 103836, "species_taxid": 103836, "relation_to_type": "type", "validated": true, "ani": 76.136, "matched_fragments": 572, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=DSM 44577", "accession": "GCA_002102215.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 75.7418, "matched_fragments": 217, "total_fragments": 2892, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015751905.1", "gtdb_species": "s__Longispora fulva", "ani": 100.0, "matched_fragments": 2890, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Longispora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000379825.1", "gtdb_species": "s__Longispora albida", "ani": 80.8529, "matched_fragments": 1198, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Longispora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900143515.1", "gtdb_species": "s__Micromonospora cremea", "ani": 77.7952, "matched_fragments": 839, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003667505.1", "gtdb_species": "s__Micromonospora sp003667505", "ani": 77.7065, "matched_fragments": 783, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018070045.1", "gtdb_species": "s__Micromonospora sp018070045", "ani": 77.6738, "matched_fragments": 815, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016863255.1", "gtdb_species": "s__Planosporangium mesophilum", "ani": 77.6411, "matched_fragments": 700, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Planosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003610235.1", "gtdb_species": "s__Catellatospora citrea", "ani": 77.6382, "matched_fragments": 995, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Catellatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.34", "min_intra_species_ani": "95.99", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_016862575.1", "gtdb_species": "s__Catellatospora bangladeshensis", "ani": 77.5884, "matched_fragments": 975, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Catellatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.24", "min_intra_species_ani": "95.24", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009720365.1", "gtdb_species": "s__Catellatospora paridis", "ani": 77.5338, "matched_fragments": 957, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Catellatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011947195.1", "gtdb_species": "s__Planosporangium thailandense", "ani": 77.4761, "matched_fragments": 751, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Planosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016863475.1", "gtdb_species": "s__Spirilliplanes yamanashiensis", "ani": 77.4741, "matched_fragments": 875, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Spirilliplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014205335.1", "gtdb_species": "s__Actinoplanes digitatis", "ani": 77.2334, "matched_fragments": 909, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011764425.1", "gtdb_species": "s__Phytohabitans houttuyneae", "ani": 77.146, "matched_fragments": 959, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Phytohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900188005.1", "gtdb_species": "s__Actinoplanes regularis", "ani": 77.039, "matched_fragments": 868, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016862795.1", "gtdb_species": "s__Dactylosporangium siamense", "ani": 77.0354, "matched_fragments": 1104, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Dactylosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016862315.1", "gtdb_species": "s__Actinoplanes palleronii", "ani": 77.0141, "matched_fragments": 948, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.70", "min_intra_species_ani": "97.70", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016862175.1", "gtdb_species": "s__Actinoplanes durhamensis", "ani": 76.9652, "matched_fragments": 909, "total_fragments": 2892, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003001815.1", "gtdb_species": "s__Actinoplanes italicus", "ani": 76.9611, "matched_fragments": 884, 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