{ "type": "genome", "identifier": "GCF_015767265.1", "organism": "Aureivirga marina", "title": "Aureivirga marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jeju National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015767265.1", "bioproject": "PRJNA224116", "biosample": "SAMN16824282", "wgs_master": "JADPIB000000000.1", "refseq_category": "reference genome", "taxid": "1182451", "species_taxid": "1182451", "organism_name": "Aureivirga marina", "infraspecific_name": "strain=LMG 26721", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/05", "asm_name": "ASM1576726v1", "asm_submitter": "Jeju National University", "gbrs_paired_asm": "GCA_015767265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/767/265/GCF_015767265.1_ASM1576726v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3927079", "genome_size_ungapped": "3926886", "gc_percent": "28.500000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015767265.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3536", "protein_coding_gene_count": "3444", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-05", "dateModified": "2020-12-05", "datePublished": "2020-12-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Aureivirga marina" ], "sample_taxid": [ "1182451" ], "sample_host_organism": [ "Axinella verrucosa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel" ], "sample_host_location_id": [], "data_size": "1.058 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3927079", "Number of Sequences": "26", "Longest Sequences (bp)": "898415", "N50 (bp)": "510385", "Gap Ratio (%)": "0.004915", "GCcontent (%)": "28.4", "Number of CDSs": "3439", "Average Protein Length": "334.6", "Coding Ratio (%)": "87.9", "Number of rRNAs": "2", "Number of tRNAs": "68", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aureivirga marina", "strain": "strain=LMG 26721", "accession": "GCA_015767265.1", "taxid": 1182451, "species_taxid": 1182451, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1298, "total_fragments": 1298, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tenacibaculum singaporense", "strain": "strain=DSM 106434", "accession": "GCA_003867015.1", "taxid": 2358479, "species_taxid": 2358479, "relation_to_type": "type", "validated": true, "ani": 77.0359, "matched_fragments": 174, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenyingzhuangia marina", "strain": "strain=CGMCC 1.12162", "accession": "GCA_014636515.1", "taxid": 1195760, "species_taxid": 1195760, "relation_to_type": "type", "validated": true, "ani": 76.8539, "matched_fragments": 132, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oricola", "strain": "strain=DSM 24956", "accession": "GCA_900106565.1", "taxid": 762486, "species_taxid": 762486, "relation_to_type": "type", "validated": true, "ani": 76.8278, "matched_fragments": 234, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=DBTF-3", "accession": "GCA_005885675.1", "taxid": 2304626, "species_taxid": 2304626, "relation_to_type": "type", "validated": true, "ani": 76.6836, "matched_fragments": 211, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenyingzhuangia fucanilytica", "strain": "strain=CZ1127", "accession": "GCA_001697185.1", "taxid": 1790137, "species_taxid": 1790137, "relation_to_type": "type", "validated": true, "ani": 76.6821, "matched_fragments": 147, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenyingzhuangia aestuarii", "strain": "strain=DSM 105044", "accession": "GCA_011927765.1", "taxid": 1647582, "species_taxid": 1647582, "relation_to_type": "type", "validated": true, "ani": 76.624, "matched_fragments": 151, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter agarilyticus", "strain": "strain=DSM 29150", "accession": "GCA_900188235.1", "taxid": 1109740, "species_taxid": 1109740, "relation_to_type": "type", "validated": true, "ani": 76.5754, "matched_fragments": 186, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum caenipelagi", "strain": "strain=CECT 8283", "accession": "GCA_004363005.1", "taxid": 1325435, "species_taxid": 1325435, "relation_to_type": "type", "validated": true, "ani": 76.5718, "matched_fragments": 188, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_001680875.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 76.5684, "matched_fragments": 225, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 76.5546, "matched_fragments": 191, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum ovolyticum", "strain": "strain=DSM 18103", "accession": "GCA_000430545.1", "taxid": 104270, "species_taxid": 104270, "relation_to_type": "type", "validated": true, "ani": 76.552, "matched_fragments": 201, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 76.5289, "matched_fragments": 227, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=LMG 26443", "accession": "GCA_020532845.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 76.5286, "matched_fragments": 228, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavicella sediminum", "strain": "strain=ALS 84", "accession": "GCA_006381105.1", "taxid": 2585141, "species_taxid": 2585141, "relation_to_type": "type", "validated": true, "ani": 76.511, "matched_fragments": 180, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_002814055.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 76.4675, "matched_fragments": 230, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 76.4256, "matched_fragments": 204, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter citreus", "strain": "strain=1KV19", "accession": "GCA_003260195.1", "taxid": 2138210, "species_taxid": 2138210, "relation_to_type": "type", "validated": true, "ani": 76.4211, "matched_fragments": 241, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter filamentus", "strain": "strain=ATCC 700397", "accession": "GCA_002943715.1", "taxid": 53483, "species_taxid": 53483, "relation_to_type": "type", "validated": true, "ani": 76.3705, "matched_fragments": 170, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.3065, "matched_fragments": 91, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 76.2847, "matched_fragments": 208, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceivirga lutea", "strain": "strain=CSW06", "accession": "GCA_014235875.1", "taxid": 1775167, "species_taxid": 1775167, "relation_to_type": "type", "validated": true, "ani": 76.0416, "matched_fragments": 66, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceivirga lutea", "strain": "strain=CGMCC 1.15761", "accession": "GCA_014643615.1", "taxid": 1775167, "species_taxid": 1775167, "relation_to_type": "type", "validated": true, "ani": 75.9972, "matched_fragments": 63, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia aestuariivivens", "strain": "strain=YSTF-M3", "accession": "GCA_014397005.1", "taxid": 2759037, "species_taxid": 2759037, "relation_to_type": "type", "validated": true, "ani": 75.9478, "matched_fragments": 134, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium solisilvae", "strain": "strain=SE-s27", "accession": "GCA_012911605.1", "taxid": 1852019, "species_taxid": 1852019, "relation_to_type": "type", "validated": true, "ani": 75.7799, "matched_fragments": 101, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga tyrosinoxydans", "strain": "strain=DSM 21164", "accession": "GCA_900176415.1", "taxid": 504486, "species_taxid": 504486, "relation_to_type": "type", "validated": true, "ani": 75.5823, "matched_fragments": 92, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cloacibacterium rupense", "strain": "strain=CGMCC 1.7656", "accession": "GCA_014645495.1", "taxid": 517423, "species_taxid": 517423, "relation_to_type": "type", "validated": true, "ani": 75.4891, "matched_fragments": 62, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Halarcobacter] arenosus", "strain": "strain=CAU 1517", "accession": "GCA_005771535.1", "taxid": 2576037, "species_taxid": 2576037, "relation_to_type": "type", "validated": true, "ani": 74.7547, "matched_fragments": 63, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015767265.1", "gtdb_species": "s__Aureivirga marina", "ani": 100.0, "matched_fragments": 1298, "total_fragments": 1298, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureivirga", "ani_circumscription_radius": 95.0, 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