{ "type": "genome", "identifier": "GCF_015773195.1", "organism": "Hymenobacter guriensis", "title": "Hymenobacter guriensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015773195.1", "bioproject": "PRJNA224116", "biosample": "SAMN16953878", "wgs_master": "JADWYK000000000.1", "refseq_category": "reference genome", "taxid": "2793065", "species_taxid": "2793065", "organism_name": "Hymenobacter guriensis", "infraspecific_name": "strain=BT594", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/06", "asm_name": "ASM1577319v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_015773195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/773/195/GCF_015773195.1_ASM1577319v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5320249", "genome_size_ungapped": "5320249", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015773195.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4641", "protein_coding_gene_count": "4566", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-06", "dateModified": "2020-12-06", "datePublished": "2020-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter guriensis" ], "sample_taxid": [ "2793065" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gyeonggi Province" ], "sample_host_location_id": [], "data_size": "1.499 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 25.0, "max": 25.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5320249", "Number of Sequences": "29", "Longest Sequences (bp)": "756982", "N50 (bp)": "320650", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.8", "Number of CDSs": "4600", "Average Protein Length": "333.3", "Coding Ratio (%)": "86.5", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1757, "total_fragments": 1761, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hymenobacter perfusus", "strain": "strain=LMG 26000", "accession": "GCA_003944765.1", "taxid": 1236770, "species_taxid": 1236770, "relation_to_type": "type", "validated": true, "ani": 81.6063, "matched_fragments": 928, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 81.4187, "matched_fragments": 920, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rigui", "strain": "strain=KCTC 12533", "accession": "GCA_003944715.1", "taxid": 334424, "species_taxid": 334424, "relation_to_type": "type", "validated": true, "ani": 81.3155, "matched_fragments": 922, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter swuensis", "strain": "strain=DY53", "accession": "GCA_000576555.1", "taxid": 1446467, "species_taxid": 1446467, "relation_to_type": "type", "validated": true, "ani": 81.1318, "matched_fragments": 894, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter persicinus", "strain": "strain=1-3-3-3", "accession": "GCA_004167665.1", "taxid": 2025506, "species_taxid": 2025506, "relation_to_type": "type", "validated": true, "ani": 81.1217, "matched_fragments": 886, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter aquaticus", "strain": "strain=JCM 31653", "accession": "GCA_004765605.1", "taxid": 1867101, "species_taxid": 1867101, "relation_to_type": "type", "validated": true, "ani": 81.0911, "matched_fragments": 968, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallilatus", "strain": "strain=9PBR-2", "accession": "GCA_003944705.1", "taxid": 2493666, "species_taxid": 2493666, "relation_to_type": "type", "validated": true, "ani": 81.0402, "matched_fragments": 916, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter duratus", "strain": "strain=BT646", "accession": "GCA_014698995.1", "taxid": 2771356, "species_taxid": 2771356, "relation_to_type": "type", "validated": true, "ani": 80.8142, "matched_fragments": 867, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacieicola", "strain": "strain=CGMCC 1.12990", "accession": "GCA_014640315.1", "taxid": 1562124, "species_taxid": 1562124, "relation_to_type": "type", "validated": true, "ani": 80.7788, "matched_fragments": 873, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter chitinivorans", "strain": "strain=DSM 11115", "accession": "GCA_002797555.1", "taxid": 89969, "species_taxid": 89969, "relation_to_type": "type", "validated": true, "ani": 80.6702, "matched_fragments": 954, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter daecheongensis", "strain": "strain=DSM 21074", "accession": "GCA_900141805.1", "taxid": 496053, "species_taxid": 496053, "relation_to_type": "type", "validated": true, "ani": 80.6403, "matched_fragments": 833, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 80.4632, "matched_fragments": 880, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 80.3231, "matched_fragments": 852, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter gelipurpurascens", "strain": "strain=DSM 11116", "accession": "GCA_900187375.1", "taxid": 89968, "species_taxid": 89968, "relation_to_type": "type", "validated": true, "ani": 79.7022, "matched_fragments": 782, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter wooponensis", "strain": "strain=JCM 19491", "accession": "GCA_004745865.1", "taxid": 1525360, "species_taxid": 1525360, "relation_to_type": "type", "validated": true, "ani": 79.4018, "matched_fragments": 740, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", 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