{ "type": "genome", "identifier": "GCF_015910705.1", "organism": "Ralstonia solanacearum", "title": "Ralstonia solanacearum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wageningen Plant Research", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015910705.1", "bioproject": "PRJNA224116", "biosample": "SAMN16125519", "wgs_master": "JACWNG000000000.1", "refseq_category": "na", "taxid": "305", "species_taxid": "305", "organism_name": "Ralstonia solanacearum", "infraspecific_name": "strain=NCPPB 325", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/10", "asm_name": "ASM1591070v1", "asm_submitter": "Wageningen Plant Research", "gbrs_paired_asm": "GCA_015910705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/910/705/GCF_015910705.1_ASM1591070v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5652708", "genome_size_ungapped": "5652708", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015910705.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "5081", "protein_coding_gene_count": "4753", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-10", "dateModified": "2020-12-10", "datePublished": "2020-12-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Ralstonia solanacearum" ], "sample_taxid": [ "305" ], "sample_host_organism": [ "Solanum lycopersicum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.541 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5652708", "Number of Sequences": "19", "Longest Sequences (bp)": "1615568", "N50 (bp)": "1360841", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.4", "Number of CDSs": "5016", "Average Protein Length": "326.7", "Coding Ratio (%)": "87.0", "Number of rRNAs": "13", "Number of tRNAs": "66", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ralstonia solanacearum", "strain": "strain=NCPPB 325", "accession": "GCA_015910705.1", "taxid": 305, "species_taxid": 305, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1862, "total_fragments": 1874, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ralstonia solanacearum", "strain": "strain=K60", "accession": "GCA_002251695.1", "taxid": 305, "species_taxid": 305, "relation_to_type": "type", "validated": true, "ani": 99.5842, "matched_fragments": 1758, "total_fragments": 1874, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 91.4396, "matched_fragments": 1375, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_024925465.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 91.3269, "matched_fragments": 1450, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia mannitolilytica", "strain": "strain=LMG 6866", "accession": "GCA_905397375.1", "taxid": 105219, "species_taxid": 105219, "relation_to_type": "type", "validated": true, "ani": 85.2108, "matched_fragments": 1085, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia insidiosa", "strain": "strain=CCUG 46789", "accession": "GCA_008801405.1", "taxid": 190721, "species_taxid": 190721, "relation_to_type": "type", "validated": true, "ani": 85.0254, "matched_fragments": 1095, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pickettii", "strain": "strain=ATCC 27511", "accession": "GCA_000743455.1", "taxid": 329, "species_taxid": 329, "relation_to_type": "type", "validated": true, "ani": 84.6177, "matched_fragments": 1047, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 78.7809, "matched_fragments": 633, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 78.7776, "matched_fragments": 681, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 78.7671, "matched_fragments": 663, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002251695.1", "gtdb_species": "s__Ralstonia solanacearum", "ani": 99.607, "matched_fragments": 1756, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.27", "min_intra_species_ani": "95.49", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.78", "num_clustered_genomes": 131, "status": "conclusive" }, { "accession": "GCF_016743075.1", "gtdb_species": "s__Ralstonia syzygii", "ani": 91.9937, "matched_fragments": 1344, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.48", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.80", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCF_003999715.1", "gtdb_species": "s__Ralstonia pseudosolanacearum", "ani": 91.3494, "matched_fragments": 1479, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "95.79", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 165, "status": "-" }, { "accession": "GCA_002298975.1", "gtdb_species": "s__Ralstonia sp002298975", "ani": 85.6612, "matched_fragments": 1107, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_905397375.1", "gtdb_species": "s__Ralstonia mannitolilytica", "ani": 85.2299, "matched_fragments": 1083, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "96.05", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_000801955.1", "gtdb_species": "s__Ralstonia sp000801955", "ani": 85.0675, "matched_fragments": 1115, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007997035.1", "gtdb_species": "s__Ralstonia sp007997035", "ani": 84.9153, "matched_fragments": 1025, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000620465.1", "gtdb_species": "s__Ralstonia sp000620465", "ani": 84.8024, "matched_fragments": 1095, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.59", "min_intra_species_ani": "96.59", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016429285.1", "gtdb_species": "s__Ralstonia sp016429285", "ani": 84.7459, "matched_fragments": 1006, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003851545.1", "gtdb_species": "s__Ralstonia sp003851545", "ani": 84.6366, "matched_fragments": 1042, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016466415.1", "gtdb_species": "s__Ralstonia pickettii", "ani": 84.5515, "matched_fragments": 1066, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.89", "min_intra_species_ani": "95.45", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 44, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.176, "doubling_h": 0.0, "growth_tmp": 28.5, "optimum_tmp": 26.429, "optimum_ph": 7.3, "genome_size": 5590453.685, "gc_content": 66.674, "coding_genes": 4721.333, "rRNA16S_genes": 3.5, "tRNA_genes": 56.2, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Ralstonia", "solanacearum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }