{
    "type": "genome",
    "identifier": "GCF_015912875.1",
    "organism": "Streptomyces clavuligerus",
    "title": "Streptomyces clavuligerus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "John Innes Centre",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_015912875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13218687",
        "wgs_master": "WKJW00000000.1",
        "refseq_category": "na",
        "taxid": "1901",
        "species_taxid": "1901",
        "organism_name": "Streptomyces clavuligerus",
        "infraspecific_name": "strain=DSM 738",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/10",
        "asm_name": "ASM1591287v1",
        "asm_submitter": "John Innes Centre",
        "gbrs_paired_asm": "GCA_015912875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/912/875/GCF_015912875.1_ASM1591287v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8818348",
        "genome_size_ungapped": "8818348",
        "gc_percent": "72.000000",
        "replicon_count": "0",
        "scaffold_count": "1712",
        "contig_count": "1712",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_015912875.1-RS_2024_08_02",
        "annotation_date": "2024-08-02",
        "total_gene_count": "8031",
        "protein_coding_gene_count": "7383",
        "non_coding_gene_count": "73",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-10",
    "dateModified": "2020-12-10",
    "datePublished": "2020-12-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces clavuligerus"
        ],
        "sample_taxid": [
            "1901"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "2.410 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 5.21,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8818348",
        "Number of Sequences": "1712",
        "Longest Sequences (bp)": "49137",
        "N50 (bp)": "9030",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.2",
        "Number of CDSs": "6517",
        "Average Protein Length": "304.9",
        "Coding Ratio (%)": "67.6",
        "Number of rRNAs": "5",
        "Number of tRNAs": "83",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces clavuligerus",
                "strain": "strain=ATCC 27064",
                "accession": "GCA_000148465.1",
                "taxid": 1901,
                "species_taxid": 1901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9659,
                "matched_fragments": 2137,
                "total_fragments": 2139,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces clavuligerus",
                "strain": "strain=ATCC 27064",
                "accession": "GCA_005519465.1",
                "taxid": 1901,
                "species_taxid": 1901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8482,
                "matched_fragments": 2013,
                "total_fragments": 2139,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces clavuligerus",
                "strain": "strain=ATCC 27064",
                "accession": "GCA_000163875.1",
                "taxid": 1901,
                "species_taxid": 1901,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.8191,
                "matched_fragments": 2013,
                "total_fragments": 2139,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces clavuligerus",
                "strain": "strain=NCIMB 14335",
                "accession": "GCA_015912435.1",
                "taxid": 1901,
                "species_taxid": 1901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8189,
                "matched_fragments": 1896,
                "total_fragments": 2139,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces clavuligerus",
                "strain": "strain=ATCC 27064",
                "accession": "GCA_015912925.1",
                "taxid": 1901,
                "species_taxid": 1901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.812,
                "matched_fragments": 1833,
                "total_fragments": 2139,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces clavuligerus",
                "strain": "strain=ATCC 27064",
                "accession": "GCA_000154925.1",
                "taxid": 1901,
                "species_taxid": 1901,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.2597,
                "matched_fragments": 1695,
                "total_fragments": 2139,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces lichenis",
                "strain": "strain=LCR6-01",
                "accession": "GCA_023218175.1",
                "taxid": 2306967,
                "species_taxid": 2306967,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8235,
                "matched_fragments": 995,
                "total_fragments": 2139,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces genisteinicus",
                "strain": "strain=CRPJ-33",
                "accession": "GCA_014489615.1",
                "taxid": 2768068,
                "species_taxid": 2768068,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7357,
                "matched_fragments": 1056,
                "total_fragments": 2139,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces somaliensis",
                "strain": "strain=DSM 40738",
                "accession": "GCA_024349285.1",
                "taxid": 78355,
                "species_taxid": 78355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4095,
                "matched_fragments": 825,
                "total_fragments": 2139,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sudanensis",
                "strain": "strain=SD 504",
                "accession": "GCA_023614315.1",
                "taxid": 436397,
                "species_taxid": 436397,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2608,
                "matched_fragments": 835,
                "total_fragments": 2139,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces roseirectus",
                "strain": "strain=CRXT-G-22",
                "accession": "GCA_014489635.1",
                "taxid": 2768066,
                "species_taxid": 2768066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9361,
                "matched_fragments": 950,
                "total_fragments": 2139,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 5.21,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_005519465.1",
                "gtdb_species": "s__Streptomyces clavuligerus",
                "ani": 99.8607,
                "matched_fragments": 2012,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 18,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009600885.1",
                "gtdb_species": "s__Streptomyces jumonjinensis_A",
                "ani": 84.5056,
                "matched_fragments": 1271,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014651115.1",
                "gtdb_species": "s__Streptomyces inusitatus",
                "ani": 84.2271,
                "matched_fragments": 1219,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006715635.1",
                "gtdb_species": "s__Streptomyces sp006715635",
                "ani": 82.2974,
                "matched_fragments": 985,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004353505.1",
                "gtdb_species": "s__Streptomyces sp004353505",
                "ani": 82.0896,
                "matched_fragments": 1021,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000377145.1",
                "gtdb_species": "s__Streptomyces sp000377145",
                "ani": 82.0896,
                "matched_fragments": 1017,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008042045.1",
                "gtdb_species": "s__Streptomyces sp008042045",
                "ani": 81.9283,
                "matched_fragments": 1022,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014649735.1",
                "gtdb_species": "s__Streptomyces lavendofoliae",
                "ani": 81.8974,
                "matched_fragments": 974,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005517195.1",
                "gtdb_species": "s__Streptomyces exfoliatus_B",
                "ani": 81.8556,
                "matched_fragments": 1018,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016919245.1",
                "gtdb_species": "s__Streptomyces zhihengii",
                "ani": 81.8416,
                "matched_fragments": 1098,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001653515.1",
                "gtdb_species": "s__Streptomyces sp001653515",
                "ani": 81.8035,
                "matched_fragments": 929,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014489615.1",
                "gtdb_species": "s__Streptomyces sp014489615",
                "ani": 81.734,
                "matched_fragments": 1056,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014649795.1",
                "gtdb_species": "s__Streptomyces melanogenes",
                "ani": 81.5324,
                "matched_fragments": 1051,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.19",
                "min_intra_species_ani": "95.19",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000478605.2",
                "gtdb_species": "s__Streptomyces thermolilacinus",
                "ani": 81.5192,
                "matched_fragments": 941,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000717735.1",
                "gtdb_species": "s__Streptomyces griseoluteus_A",
                "ani": 81.4591,
                "matched_fragments": 1009,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 96.3384,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014654895.1",
                "gtdb_species": "s__Streptomyces filamentosus",
                "ani": 81.4386,
                "matched_fragments": 1063,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "96.27",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900105415.1",
                "gtdb_species": "s__Streptomyces sp900105415",
                "ani": 81.4356,
                "matched_fragments": 1047,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.65",
                "min_intra_species_ani": "95.65",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008271805.1",
                "gtdb_species": "s__Streptomyces sp008271805",
                "ani": 81.4099,
                "matched_fragments": 945,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014649755.1",
                "gtdb_species": "s__Streptomyces litmocidini",
                "ani": 81.4044,
                "matched_fragments": 1015,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.07",
                "min_intra_species_ani": "95.07",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014656075.1",
                "gtdb_species": "s__Streptomyces hydrogenans",
                "ani": 81.3973,
                "matched_fragments": 1062,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.17",
                "min_intra_species_ani": "97.53",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014650175.1",
                "gtdb_species": "s__Streptomyces termitum",
                "ani": 81.3174,
                "matched_fragments": 1044,
                "total_fragments": 2139,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 28.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.341,
        "genome_size": 7926188.667,
        "gc_content": 71.576,
        "coding_genes": 6094.75,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 65.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.049,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Streptomyces",
        "clavuligerus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}