{ "type": "genome", "identifier": "GCF_015965555.1", "organism": "Citrobacter rodentium NBRC 105723 = DSM 16636", "title": "Citrobacter rodentium NBRC 105723 = DSM 16636", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Center for Biotechnology Information", "publication": [ {} ], "properties": { "assembly_accession": "GCF_015965555.1", "bioproject": "PRJNA224116", "biosample": "SAMEA1486318", "wgs_master": "DACULU000000000.1", "refseq_category": "na", "taxid": "1218085", "species_taxid": "67825", "organism_name": "Citrobacter rodentium NBRC 105723 = DSM 16636", "infraspecific_name": "strain=DSM 16636", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/11", "asm_name": "PDT000619840.1", "asm_submitter": "National Center for Biotechnology Information", "gbrs_paired_asm": "GCA_015965555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/015/965/555/GCF_015965555.1_PDT000619840.1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5245589", "genome_size_ungapped": "5245589", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "198", "contig_count": "198", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_015965555.1-RS_2024_03_30", "annotation_date": "2024-03-30", "total_gene_count": "5114", "protein_coding_gene_count": "4778", "non_coding_gene_count": "73", "pubmed_id": "30286803" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-11", "dateModified": "2020-12-11", "datePublished": "2020-12-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Citrobacter rodentium NBRC 105723 = DSM 16636" ], "sample_taxid": [ "1218085" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.494 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5245589", "Number of Sequences": "198", "Longest Sequences (bp)": "236808", "N50 (bp)": "63782", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.6", "Number of CDSs": "4894", "Average Protein Length": "305.3", "Coding Ratio (%)": "85.5", "Number of rRNAs": "0", "Number of tRNAs": "60", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_015965555.1", "taxid": 67825, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 82.2453, "matched_fragments": 881, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 82.1871, "matched_fragments": 872, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1439, "matched_fragments": 879, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.9645, "matched_fragments": 847, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia sacchari", "strain": "strain=SP1", "accession": "GCA_000300455.4", "taxid": 1158459, "species_taxid": 1158459, "relation_to_type": "type", "validated": true, "ani": 81.1594, "matched_fragments": 800, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia sacchari", "strain": "strain=CGMCC 1.12102", "accession": "GCA_900100995.1", "taxid": 1158459, "species_taxid": 1158459, "relation_to_type": "type", "validated": true, "ani": 81.1419, "matched_fragments": 797, "total_fragments": 1664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Citrobacter", "rodentium", "NBRC", "105723", "=", "DSM", "16636" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }