{ "type": "genome", "identifier": "GCF_016019955.1", "organism": "Thiosulfatihalobacter marinus", "title": "Thiosulfatihalobacter marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016019955.1", "bioproject": "PRJNA224116", "biosample": "SAMN16881697", "wgs_master": "JAECRZ000000000.1", "refseq_category": "reference genome", "taxid": "2792481", "species_taxid": "2792481", "organism_name": "Thiosulfatihalobacter marinus", "infraspecific_name": "strain=GL-11-2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/14", "asm_name": "ASM1601995v1", "asm_submitter": "Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources", "gbrs_paired_asm": "GCA_016019955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/019/955/GCF_016019955.1_ASM1601995v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4158699", "genome_size_ungapped": "4158499", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016019955.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4098", "protein_coding_gene_count": "4014", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-14", "dateModified": "2020-12-14", "datePublished": "2020-12-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Thiosulfatihalobacter marinus" ], "sample_taxid": [ "2792481" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hangzhou" ], "sample_host_location_id": [], "data_size": "1.159 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4158699", "Number of Sequences": "66", "Longest Sequences (bp)": "636652", "N50 (bp)": "281625", "Gap Ratio (%)": "0.004809", "GCcontent (%)": "62.3", "Number of CDSs": "4061", "Average Protein Length": "308.9", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius atlanticus", "strain": "strain=R12B", "accession": 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2692236, "relation_to_type": "type", "validated": true, "ani": 78.8998, "matched_fragments": 508, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 78.8702, "matched_fragments": 510, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=DSM 29589", "accession": "GCA_900142665.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 78.858, "matched_fragments": 452, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 78.8001, "matched_fragments": 457, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia sediminis", "strain": "strain=ZQ172", "accession": "GCA_003990645.1", "taxid": 2497945, "species_taxid": 2497945, "relation_to_type": "type", "validated": true, "ani": 78.7451, "matched_fragments": 546, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 78.7252, "matched_fragments": 518, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera daeponensis", "strain": "strain=DSM 23529", "accession": "GCA_000473145.1", "taxid": 405746, "species_taxid": 405746, "relation_to_type": "type", "validated": true, "ani": 78.689, "matched_fragments": 491, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius aquimarinus", "strain": "strain=KMM 8518", "accession": "GCA_018219815.1", "taxid": 2785917, "species_taxid": 2785917, "relation_to_type": "type", "validated": true, "ani": 78.6554, "matched_fragments": 474, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 78.6512, "matched_fragments": 529, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera methylohalidivorans", "strain": "strain=DSM 14336; MB2", "accession": "GCA_000511355.1", "taxid": 133924, "species_taxid": 133924, "relation_to_type": "type", "validated": true, "ani": 78.4571, "matched_fragments": 450, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia abyssi", "strain": "strain=DSM 100673", "accession": "GCA_003014475.1", "taxid": 1662395, "species_taxid": 1662395, "relation_to_type": "type", "validated": true, "ani": 78.4065, "matched_fragments": 525, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 78.3405, "matched_fragments": 456, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutimaribacter saemankumensis", "strain": "strain=DSM 28010", "accession": "GCA_900100005.1", "taxid": 490829, "species_taxid": 490829, "relation_to_type": "type", "validated": true, "ani": 78.3175, "matched_fragments": 451, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera caerulea", "strain": "strain=DSM 24564", "accession": "GCA_000473325.1", "taxid": 506591, "species_taxid": 506591, "relation_to_type": "type", "validated": true, "ani": 78.2798, "matched_fragments": 461, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia haliotis", "strain": "strain=DSM 28453", "accession": "GCA_900114415.1", "taxid": 1280847, "species_taxid": 1280847, "relation_to_type": "type", "validated": true, "ani": 78.1377, "matched_fragments": 445, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0287, "matched_fragments": 434, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiruegeria litorea", "strain": 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