{
    "type": "genome",
    "identifier": "GCF_016026635.1",
    "organism": "Staphylococcus pseudintermedius",
    "title": "Staphylococcus pseudintermedius",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US Food and Drug Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016026635.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13450460",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "283734",
        "species_taxid": "283734",
        "organism_name": "Staphylococcus pseudintermedius",
        "infraspecific_name": "strain=FDAARGOS_930",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/14",
        "asm_name": "ASM1602663v1",
        "asm_submitter": "US Food and Drug Administration",
        "gbrs_paired_asm": "GCA_016026635.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/026/635/GCF_016026635.1_ASM1602663v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2562839",
        "genome_size_ungapped": "2562839",
        "gc_percent": "37.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016026635.1-RS_2024_04_06",
        "annotation_date": "2024-04-06",
        "total_gene_count": "2401",
        "protein_coding_gene_count": "2280",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-14",
    "dateModified": "2020-12-14",
    "datePublished": "2020-12-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus pseudintermedius"
        ],
        "sample_taxid": [
            "283734"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown",
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.720 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2562839",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2562839",
        "N50 (bp)": "2562839",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.7",
        "Number of CDSs": "2377",
        "Average Protein Length": "299.4",
        "Coding Ratio (%)": "83.3",
        "Number of rRNAs": "19",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Staphylococcus pseudintermedius",
                "strain": "strain=FDAARGOS_930",
                "accession": "GCA_016026635.1",
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                "species_taxid": 283734,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 854,
                "total_fragments": 854,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Staphylococcus pseudintermedius",
                "strain": "strain=LMG 22219",
                "accession": "GCA_001792775.2",
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                "species_taxid": 283734,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 821,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus pseudintermedius",
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                "accession": "GCA_002902125.1",
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                "validated": true,
                "ani": 99.8911,
                "matched_fragments": 736,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus delphini",
                "strain": "strain=NCTC12225",
                "accession": "GCA_900636325.1",
                "taxid": 53344,
                "species_taxid": 53344,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2089,
                "matched_fragments": 730,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus delphini",
                "strain": "strain=NCTC 12225",
                "accession": "GCA_002902785.1",
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                "species_taxid": 53344,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1396,
                "matched_fragments": 695,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus intermedius",
                "strain": "strain=NCTC 11048",
                "accession": "GCA_002902385.1",
                "taxid": 1285,
                "species_taxid": 1285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0347,
                "matched_fragments": 680,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus intermedius",
                "strain": "strain=NCTC 11048",
                "accession": "GCA_000308095.1",
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                "species_taxid": 1285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0276,
                "matched_fragments": 651,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus cornubiensis",
                "strain": "strain=NW1",
                "accession": "GCA_900183575.1",
                "taxid": 1986155,
                "species_taxid": 1986155,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4532,
                "matched_fragments": 709,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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        },
        "gtdb_result": [
            {
                "accession": "GCF_001792775.2",
                "gtdb_species": "s__Staphylococcus pseudintermedius",
                "ani": 99.9619,
                "matched_fragments": 821,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "98.36",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 431,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900636325.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.77",
                "min_intra_species_ani": "95.78",
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                "num_clustered_genomes": 24,
                "status": "-"
            },
            {
                "accession": "GCF_010365305.1",
                "gtdb_species": "s__Staphylococcus sp010365305",
                "ani": 91.9919,
                "matched_fragments": 724,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002902385.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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                "mean_intra_species_ani": "99.80",
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                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_900183575.1",
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                "matched_fragments": 711,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": -0.052,
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        "growth_tmp": 36.0,
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        "genome_size": 2671298.455,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Staphylococcus",
        "pseudintermedius"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}