{ "type": "genome", "identifier": "GCF_016026735.1", "organism": "Serratia rubidaea", "title": "Serratia rubidaea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016026735.1", "bioproject": "PRJNA224116", "biosample": "SAMN13450456", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "61652", "species_taxid": "61652", "organism_name": "Serratia rubidaea", "infraspecific_name": "strain=FDAARGOS_926", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/14", "asm_name": "ASM1602673v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_016026735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/026/735/GCF_016026735.1_ASM1602673v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4995010", "genome_size_ungapped": "4995010", "gc_percent": "59.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016026735.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4711", "protein_coding_gene_count": "4553", "non_coding_gene_count": "120", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-14", "dateModified": "2020-12-14", "datePublished": "2020-12-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Serratia rubidaea" ], "sample_taxid": [ "61652" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Not applicable" ], "sample_host_location_id": [], "data_size": "1.391 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4995010", "Number of Sequences": "1", "Longest Sequences (bp)": "4995010", "N50 (bp)": "4995010", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.3", "Number of CDSs": "4608", "Average Protein Length": "314.4", "Coding Ratio (%)": "87.0", "Number of rRNAs": "22", "Number of tRNAs": "89", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serratia rubidaea", "strain": "strain=FDAARGOS_926", "accession": "GCA_016026735.1", "taxid": 61652, "species_taxid": 61652, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1664, "total_fragments": 1665, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia rubidaea", "strain": "strain=NBRC 103169", "accession": "GCA_001598675.1", "taxid": 61652, "species_taxid": 61652, "relation_to_type": "type", "validated": true, "ani": 99.9929, "matched_fragments": 1635, "total_fragments": 1665, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia rubidaea", "strain": "strain=CIP 103234", "accession": "GCA_001304675.1", "taxid": 61652, "species_taxid": 61652, "relation_to_type": "type", "validated": true, "ani": 99.8998, "matched_fragments": 1481, "total_fragments": 1665, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia rhizosphaerae", "strain": "strain=KUDC3025", "accession": "GCA_009817885.1", "taxid": 2597702, "species_taxid": 2597702, "relation_to_type": "type", "validated": true, "ani": 92.8926, "matched_fragments": 1451, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 84.3836, "matched_fragments": 1078, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia odorifera", "strain": "strain=NCTC11214", "accession": "GCA_900635445.1", "taxid": 618, "species_taxid": 618, "relation_to_type": "type", "validated": true, "ani": 83.6975, "matched_fragments": 1096, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia odorifera", "strain": "strain=DSM 4582", "accession": "GCA_000163595.1", "taxid": 618, "species_taxid": 618, "relation_to_type": "type", "validated": true, "ani": 83.5883, "matched_fragments": 1090, "total_fragments": 1665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella rivi", "strain": "strain=FC061912-K", "accession": "GCA_019049655.1", "taxid": 2816249, "species_taxid": 2816249, 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"status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.158, "cell_length": 0.113, "doubling_h": -0.246, "growth_tmp": 30.5, "optimum_tmp": 28.433, "optimum_ph": 7.172, "genome_size": 4938371.125, "gc_content": 58.733, "coding_genes": 4461.5, "rRNA16S_genes": 7.0, "tRNA_genes": 76.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.333, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Serratia", "rubidaea" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }