{ "type": "genome", "identifier": "GCF_016027055.1", "organism": "Acinetobacter johnsonii", "title": "Acinetobacter johnsonii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016027055.1", "bioproject": "PRJNA224116", "biosample": "SAMN13450440", "wgs_master": "na", "refseq_category": "na", "taxid": "40214", "species_taxid": "40214", "organism_name": "Acinetobacter johnsonii", "infraspecific_name": "strain=FDAARGOS_910", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/14", "asm_name": "ASM1602705v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_016027055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/027/055/GCF_016027055.1_ASM1602705v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3617455", "genome_size_ungapped": "3617455", "gc_percent": "41.500000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016027055.1-RS_2024_11_28", "annotation_date": "2024-11-28", "total_gene_count": "3576", "protein_coding_gene_count": "3328", "non_coding_gene_count": "117", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-14", "dateModified": "2020-12-14", "datePublished": "2020-12-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter johnsonii" ], "sample_taxid": [ "40214" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Not applicable" ], "sample_host_location_id": [], "data_size": "1.024 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3617455", "Number of Sequences": "4", "Longest Sequences (bp)": "3598417", "N50 (bp)": "3598417", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.4", "Number of CDSs": "3522", "Average Protein Length": "292.9", "Coding Ratio (%)": "85.6", "Number of rRNAs": "21", "Number of tRNAs": "91", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter johnsonii", "strain": "strain=FDAARGOS_910", "accession": "GCA_016027055.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1202, "total_fragments": 1204, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9998, "matched_fragments": 1201, "total_fragments": 1204, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=CIP 64.6", "accession": "GCA_000368045.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 99.972, "matched_fragments": 1188, "total_fragments": 1204, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=DSM 6963", "accession": "GCA_000949655.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 99.8736, "matched_fragments": 1095, "total_fragments": 1204, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 81.7614, "matched_fragments": 561, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter cumulans", "strain": "strain=WCHAc060092", "accession": "GCA_003024525.3", "taxid": 2136182, "species_taxid": 2136182, "relation_to_type": "type", "validated": true, "ani": 81.5688, "matched_fragments": 532, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.9192, "matched_fragments": 500, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter defluvii", "strain": "strain=WCHA30", "accession": "GCA_001704615.3", "taxid": 1871111, "species_taxid": 1871111, "relation_to_type": "type", "validated": true, "ani": 80.502, "matched_fragments": 458, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 80.4805, "matched_fragments": 390, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 80.0634, "matched_fragments": 479, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.9609, "matched_fragments": 440, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368045.1", "gtdb_species": "s__Acinetobacter johnsonii", "ani": 99.972, "matched_fragments": 1188, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.19", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.80", "num_clustered_genomes": 59, "status": "conclusive" }, { "accession": "GCF_002165305.2", "gtdb_species": "s__Acinetobacter sp002165305", "ani": 93.0204, "matched_fragments": 974, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002135205.1", "gtdb_species": "s__Acinetobacter sp002135205", "ani": 89.4875, "matched_fragments": 936, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.42", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_004331175.1", "gtdb_species": "s__Acinetobacter sp004331175", "ani": 82.1856, "matched_fragments": 538, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004331255.1", "gtdb_species": "s__Acinetobacter sp004331255", "ani": 81.9841, "matched_fragments": 546, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000400735.1", "gtdb_species": "s__Acinetobacter tandoii", "ani": 81.7799, "matched_fragments": 561, 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1204, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_004336635.1", "gtdb_species": "s__Acinetobacter sp004336635", "ani": 81.1203, "matched_fragments": 574, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.82", "min_intra_species_ani": "95.73", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003664645.1", "gtdb_species": "s__Acinetobacter chengduensis", "ani": 80.9237, "matched_fragments": 499, "total_fragments": 1204, 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