{
    "type": "genome",
    "identifier": "GCF_016027615.1",
    "organism": "Corynebacterium minutissimum",
    "title": "Corynebacterium minutissimum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US Food and Drug Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016027615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13450424",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "38301",
        "species_taxid": "38301",
        "organism_name": "Corynebacterium minutissimum",
        "infraspecific_name": "strain=FDAARGOS_894",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/14",
        "asm_name": "ASM1602761v1",
        "asm_submitter": "US Food and Drug Administration",
        "gbrs_paired_asm": "GCA_016027615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/027/615/GCF_016027615.1_ASM1602761v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2695961",
        "genome_size_ungapped": "2695961",
        "gc_percent": "60.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-15",
        "total_gene_count": "2504",
        "protein_coding_gene_count": "2404",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-14",
    "dateModified": "2020-12-14",
    "datePublished": "2020-12-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium minutissimum"
        ],
        "sample_taxid": [
            "38301"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown",
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.763 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2695961",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2695961",
        "N50 (bp)": "2695961",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.9",
        "Number of CDSs": "2517",
        "Average Protein Length": "321.1",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "12",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Corynebacterium minutissimum",
                "strain": "strain=FDAARGOS_894",
                "accession": "GCA_016027615.1",
                "taxid": 38301,
                "species_taxid": 38301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 898,
                "total_fragments": 898,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium minutissimum",
                "strain": "strain=NCTC10288",
                "accession": "GCA_900478045.1",
                "taxid": 38301,
                "species_taxid": 38301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9999,
                "matched_fragments": 897,
                "total_fragments": 898,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium minutissimum",
                "strain": "strain=NBRC 15361",
                "accession": "GCA_001552395.1",
                "taxid": 38301,
                "species_taxid": 38301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9779,
                "matched_fragments": 867,
                "total_fragments": 898,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium minutissimum",
                "strain": "strain=ATCC 23348",
                "accession": "GCA_000805675.1",
                "taxid": 38301,
                "species_taxid": 38301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9608,
                "matched_fragments": 867,
                "total_fragments": 898,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium singulare",
                "strain": "strain=IBS B52218",
                "accession": "GCA_000833575.1",
                "taxid": 161899,
                "species_taxid": 161899,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3371,
                "matched_fragments": 732,
                "total_fragments": 898,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000805675.1",
                "gtdb_species": "s__Corynebacterium minutissimum",
                "ani": 99.9608,
                "matched_fragments": 867,
                "total_fragments": 898,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016889765.1",
                "gtdb_species": "s__Corynebacterium minutissimum_B",
                "ani": 94.2094,
                "matched_fragments": 803,
                "total_fragments": 898,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
                "min_intra_species_ani": "96.19",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001812805.1",
                "gtdb_species": "s__Corynebacterium sp001812805",
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                "matched_fragments": 794,
                "total_fragments": 898,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000833575.1",
                "gtdb_species": "s__Corynebacterium singulare",
                "ani": 85.3437,
                "matched_fragments": 734,
                "total_fragments": 898,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.05",
                "min_intra_species_ani": "96.95",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000988205.1",
                "gtdb_species": "s__Corynebacterium minutissimum_A",
                "ani": 84.585,
                "matched_fragments": 682,
                "total_fragments": 898,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.53",
                "min_intra_species_ani": "96.09",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_002861385.1",
                "gtdb_species": "s__Corynebacterium aurimucosum_C",
                "ani": 84.5184,
                "matched_fragments": 657,
                "total_fragments": 898,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.04",
                "min_intra_species_ani": "96.50",
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                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 28,
                "status": "-"
            },
            {
                "accession": "GCF_000022905.1",
                "gtdb_species": "s__Corynebacterium aurimucosum",
                "ani": 84.419,
                "matched_fragments": 677,
                "total_fragments": 898,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_016728705.1",
                "gtdb_species": "s__Corynebacterium sp001807205",
                "ani": 84.3151,
                "matched_fragments": 670,
                "total_fragments": 898,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.15",
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                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 8,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.0,
        "doubling_h": -0.089,
        "growth_tmp": 35.0,
        "optimum_tmp": 36.5,
        "optimum_ph": 7.292,
        "genome_size": 2690303.6,
        "gc_content": 59.925,
        "coding_genes": 2364.0,
        "rRNA16S_genes": 4.282,
        "tRNA_genes": 51.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.75,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Corynebacterium",
        "minutissimum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}