{ "type": "genome", "identifier": "GCF_016027675.1", "organism": "Serratia plymuthica", "title": "Serratia plymuthica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016027675.1", "bioproject": "PRJNA224116", "biosample": "SAMN13450425", "wgs_master": "na", "refseq_category": "na", "taxid": "82996", "species_taxid": "82996", "organism_name": "Serratia plymuthica", "infraspecific_name": "strain=FDAARGOS_895", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/14", "asm_name": "ASM1602767v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_016027675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/027/675/GCF_016027675.1_ASM1602767v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5349167", "genome_size_ungapped": "5349167", "gc_percent": "56.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-15", "total_gene_count": "5005", "protein_coding_gene_count": "4804", "non_coding_gene_count": "121", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-14", "dateModified": "2020-12-14", "datePublished": "2020-12-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Serratia plymuthica" ], "sample_taxid": [ "82996" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Not applicable" ], "sample_host_location_id": [], "data_size": "1.509 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5349167", "Number of Sequences": "1", "Longest Sequences (bp)": "5349167", "N50 (bp)": "5349167", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.9", "Number of CDSs": "4908", "Average Protein Length": "315.5", "Coding Ratio (%)": "86.8", "Number of rRNAs": "22", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serratia plymuthica", "strain": "strain=FDAARGOS_895", "accession": "GCA_016027675.1", "taxid": 82996, "species_taxid": 82996, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1783, "total_fragments": 1783, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia plymuthica", "strain": "strain=NBRC 102599", "accession": "GCA_001590925.1", "taxid": 82996, "species_taxid": 82996, "relation_to_type": "type", "validated": true, "ani": 99.9591, "matched_fragments": 1726, "total_fragments": 1783, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia inhibens", "strain": "strain=S40", "accession": "GCA_003591175.1", "taxid": 2338073, "species_taxid": 2338073, "relation_to_type": "type", "validated": true, "ani": 94.1426, "matched_fragments": 1531, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia quinivorans", "strain": "strain=NCTC11544", "accession": "GCA_900457075.1", "taxid": 137545, "species_taxid": 137545, "relation_to_type": "suspected-type", "validated": true, "ani": 87.2595, "matched_fragments": 1401, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia proteamaculans", "strain": "strain=CCUG 14510", "accession": "GCA_008830365.1", "taxid": 28151, "species_taxid": 28151, "relation_to_type": "type", "validated": true, "ani": 87.2427, "matched_fragments": 1386, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia liquefaciens", "strain": "strain=ATCC 27592", "accession": "GCA_000422085.1", "taxid": 614, "species_taxid": 614, "relation_to_type": "type", "validated": true, "ani": 86.9159, "matched_fragments": 1402, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia ficaria", "strain": "strain=NBRC 102596", "accession": "GCA_001590885.1", "taxid": 61651, "species_taxid": 61651, "relation_to_type": "type", "validated": true, "ani": 86.4805, "matched_fragments": 1272, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 86.4112, "matched_fragments": 1295, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia grimesii", "strain": "strain=NCTC11543", "accession": "GCA_900456935.1", "taxid": 82995, "species_taxid": 82995, "relation_to_type": "type", "validated": true, "ani": 85.5191, "matched_fragments": 1331, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 85.2338, "matched_fragments": 1231, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, 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1387, "total_fragments": 1783, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "95.51", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_012719855.1", "gtdb_species": "s__Serratia liquefaciens_A", "ani": 86.964, "matched_fragments": 1341, "total_fragments": 1783, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.92", "min_intra_species_ani": "97.90", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000422085.1", "gtdb_species": "s__Serratia liquefaciens", "ani": 86.9192, "matched_fragments": 1401, 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