{ "type": "genome", "identifier": "GCF_016027855.1", "organism": "Atlantibacter hermannii", "title": "Atlantibacter hermannii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016027855.1", "bioproject": "PRJNA224116", "biosample": "SAMN13450418", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "565", "species_taxid": "565", "organism_name": "Atlantibacter hermannii", "infraspecific_name": "strain=FDAARGOS_888", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/14", "asm_name": "ASM1602785v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_016027855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/027/855/GCF_016027855.1_ASM1602785v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4554875", "genome_size_ungapped": "4554875", "gc_percent": "54.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-15", "total_gene_count": "4273", "protein_coding_gene_count": "4097", "non_coding_gene_count": "113", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-14", "dateModified": "2020-12-14", "datePublished": "2020-12-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Atlantibacter hermannii" ], "sample_taxid": [ "565" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Not applicable" ], "sample_host_location_id": [], "data_size": "1.288 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4554875", "Number of Sequences": "1", "Longest Sequences (bp)": "4554875", "N50 (bp)": "4554875", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.1", "Number of CDSs": "4187", "Average Protein Length": "317.9", "Coding Ratio (%)": "87.7", "Number of rRNAs": "22", "Number of tRNAs": "84", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Atlantibacter hermannii", "strain": "strain=FDAARGOS_888", "accession": "GCA_016027855.1", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"strain": "strain=ATCC 51329", "accession": "GCA_000409285.1", "taxid": 413501, "species_taxid": 413501, "relation_to_type": "type", "validated": true, "ani": 80.6679, "matched_fragments": 742, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 80.5434, "matched_fragments": 698, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccibacter colletis", "strain": "strain=1383", "accession": "GCA_000696575.1", "taxid": 1505757, "species_taxid": 1505757, "relation_to_type": "type", "validated": true, "ani": 80.5356, "matched_fragments": 715, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 80.4967, "matched_fragments": 771, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter corydidari", "strain": "", "accession": "GCA_021172065.1", "taxid": 2891570, "species_taxid": 2891570, "relation_to_type": "type", "validated": true, "ani": 80.4049, "matched_fragments": 718, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=ATCC 8090", "accession": "GCA_011064845.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 80.344, "matched_fragments": 672, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 80.3375, "matched_fragments": 710, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella aerogenes", "strain": "strain=KCTC 2190", "accession": "GCA_000215745.1", "taxid": 548, "species_taxid": 548, "relation_to_type": "type", "validated": true, "ani": 80.3292, "matched_fragments": 703, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_015965555.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 80.2402, "matched_fragments": 743, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=MTCC 1658", "accession": "GCA_000312465.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 80.1067, 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Atlantibacter", "hermannii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }