# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_00010	sequence01:204..887(-)	partial			WP_080138335.1	NEL-type E3 ubiquitin ligase domain-containing protein	89.9	37.0	36.9
MGA_16	LOCUS_00160	sequence01:16465..16767(-)	frameshift,internal_stop_codon	16932..16934(-),17004..17006(-)	16793	WP_001137620.1	curli production assembly/transport protein CsgG	100.0	36.1	98.0
MGA_17	LOCUS_00170	sequence01:17004..17192(-)	frameshift,internal_stop_codon	17235..17237(-),16932..16934(-),17004..17006(-)	16793	WP_001189332.1	curli production assembly/transport protein CsgG	100.0	22.4	93.5
MGA_18	LOCUS_00180	sequence01:17307..17522(-)	frameshift		17557	WP_001264073.1	curli production assembly/transport protein CsgF	100.0	51.4	97.2
MGA_19	LOCUS_00190	sequence01:17471..17722(-)	frameshift		17557	WP_001264073.1	curli production assembly/transport protein CsgF	65.1	39.1	90.7
MGA_21	LOCUS_00210	sequence01:18143..18334(-)	frameshift,internal_stop_codon	18390..18392(-)	18467,18557	WP_000481509.1	biofilm master transcriptional regulator CsgD	98.4	28.7	96.8
MGA_22	LOCUS_00220	sequence01:18546..18749(-)	frameshift,internal_stop_codon	18389..18391(-)	18556,18466,18748	WP_000481516.1	biofilm master transcriptional regulator CsgD	95.5	30.8	90.6
MGA_125	LOCUS_01250	sequence01:119658..119888(+)	frameshift,internal_stop_codon	119646..119648(+)	119558	WP_085947598.1	IS3-like element IS3 family transposase	71.1	14.0	83.3
MGA_126	LOCUS_01260	sequence01:119971..121038(+)	partial			WP_004599449.1	LD-carboxypeptidase	64.8	68.5	35.0
MGA_133	LOCUS_01330	sequence01:132684..132959(-)	partial			WP_001537478.1	RICIN domain-containing protein	100.0	52.6	91.2
MGA_140	LOCUS_01400	sequence01:140503..140874(-)	frameshift		140538	WP_000929974.1	cytochrome b	93.5	65.3	79.1
MGA_150	LOCUS_01500	sequence01:149525..149725(+)	partial			WP_000175788.1	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	80.3	20.6	83.3
MGA_172	LOCUS_01720	sequence01:168371..168646(+)	frameshift,internal_stop_codon	168295..168297(+)	168354,168650,168628	WP_000029244.1	anaerobic sulfatase maturase	52.7	12.1	81.2
MGA_173	LOCUS_01730	sequence01:168734..168898(+)	frameshift		168650,168628	WP_000029244.1	anaerobic sulfatase maturase	100.0	13.6	96.3
MGA_204	LOCUS_02040	sequence01:199494..199703(-)	frameshift		199704	WP_000019093.1	catalase HPII	84.1	7.7	94.8
MGA_205	LOCUS_02050	sequence01:199690..200064(-)	frameshift		199703,200325,200231	WP_000019093.1	catalase HPII	96.8	16.0	96.7
MGA_206	LOCUS_02060	sequence01:200260..200505(-)	frameshift		200587,200323,200229,200614	WP_013097017.1	catalase HPII	100.0	10.8	74.1
MGA_207	LOCUS_02070	sequence01:200893..201117(-)	frameshift		200613,200895	WP_000019093.1	catalase HPII	100.0	9.9	94.6
MGA_219	LOCUS_02190	sequence01:210981..211424(+)	frameshift		211518,211367	WP_011073373.1	IS481-like element ISSod13 family transposase	82.3	35.0	74.4
MGA_220	LOCUS_02200	sequence01:211375..211530(+)	frameshift,internal_stop_codon	211762..211764(+),211744..211746(+)	211797,211518,211367	WP_011073373.1	IS481-like element ISSod13 family transposase	94.1	13.9	77.1
MGA_221	LOCUS_02210	sequence01:211569..211745(+)	frameshift,internal_stop_codon	211762..211764(+),211744..211746(+)	211797,211518,211367	WP_011073373.1	IS481-like element ISSod13 family transposase	100.0	16.8	84.5
MGA_249	LOCUS_02490	sequence01:240530..240808(-)	partial			WP_000261850.1	L-cystine transporter	100.0	20.5	93.5
MGA_259	LOCUS_02590	sequence01:250339..250650(-)	partial			WP_000756081.1	APC family permease	100.0	24.2	82.4
MGA_307	LOCUS_03070	sequence01:294820..295263(-)	partial			WP_001081018.1	C40 family peptidase	100.0	51.8	95.9
MGA_388	LOCUS_03880	sequence01:379930..380175(-)	frameshift		380171	WP_001068053.1	efflux MFS transporter YdeE	95.1	23.0	72.5
MGA_400	LOCUS_04000	sequence01:392277..392627(+)	partial			WP_013096462.1	porin OmpS2	50.0	16.5	53.2
MGA_411	LOCUS_04110	sequence01:401937..402158(-)	partial			WP_001138073.1	Tn3 family transposase	94.5	7.0	76.8
MGA_414	LOCUS_04140	sequence01:404256..404420(+)	frameshift,internal_stop_codon	404219..404221(+)	404251	WP_013095605.1	lysozyme	100.0	36.2	61.1
MGA_415	LOCUS_04150	sequence01:404594..405487(+)	partial			WP_046236980.1	Tc toxin subunit A	85.2	32.2	25.5
MGA_417	LOCUS_04170	sequence01:405641..407422(+)	partial			WP_002210089.1	SpvB/TcaC N-terminal domain-containing protein	57.5	23.7	45.0
MGA_446	LOCUS_04450	sequence01:438510..438998(+)	partial			WP_015366426.1	L-asparagine permease	48.8	16.3	93.7
MGA_464	LOCUS_04630	sequence01:462708..462932(-)	internal_stop_codon	462966..462968(-)		WP_000369547.1	XRE family transcriptional regulator	100.0	41.6	89.2
MGA_465	LOCUS_04640	sequence01:463137..463400(+)	frameshift,internal_stop_codon	463415..463417(+)	463410,463310	WP_001238501.1	benzoate/H(+) symporter BenE family transporter	69.0	15.3	86.7
MGA_471	LOCUS_04700	sequence01:468167..468358(+)	frameshift		468016	WP_000144622.1	M42 family metallopeptidase	66.7	11.3	95.2
MGA_472	LOCUS_04710	sequence01:468503..468739(+)	frameshift		468486,468399	WP_013094807.1	type VI secretion system tube protein TssD	96.2	47.2	58.7
MGA_482	LOCUS_04810	sequence01:480838..480996(-)	partial			WP_011114760.1	hypothetical protein	98.1	21.4	54.9
MGA_489	LOCUS_04880	sequence01:491636..492139(-)	partial			WP_002209769.1	phosphatidate cytidylyltransferase	71.9	38.8	60.0
MGA_513	LOCUS_05120	sequence01:518670..518978(-)	partial			WP_000163369.1	helix-turn-helix domain-containing protein	100.0	51.0	95.1
MGA_514	LOCUS_05130	sequence01:519168..519575(+)	partial			WP_000097260.1	B3/4 domain-containing protein	100.0	59.2	94.8
MGA_516	LOCUS_05150	sequence01:520073..520357(-)	frameshift,internal_stop_codon	520596..520598(-)	520355,520487	WP_001062616.1	peroxiredoxin	97.9	51.9	78.1
MGA_552	LOCUS_05510	sequence01:557676..558041(-)	partial			WP_000904979.1	site-specific DNA recombinase	92.6	60.9	90.2
MGA_555	LOCUS_05540	sequence01:559953..560447(-)	partial			WP_000268883.1	prophage tail fiber N-terminal domain-containing protein	100.0	20.0	58.9
MGA_563	LOCUS_05600	sequence02:5252..5470(+)	partial			WP_015064994.1	CaiB/BaiF CoA-transferase family protein	68.1	12.3	59.2
MGA_567	LOCUS_05640	sequence02:10149..10298(+)	partial			WP_001159469.1	gold resistance metallochaperone GolB	95.9	73.4	74.5
MGA_581	LOCUS_05780	sequence02:30376..30555(+)	internal_stop_codon	30097..30099(+),30265..30267(+)		WP_000950094.1	hydrogen peroxide resistance inhibitor IprA	100.0	28.5	84.7
MGA_592	LOCUS_05890	sequence02:40086..40442(+)	frameshift,internal_stop_codon	40440..40442(+),40059..40061(+)	40649	WP_000484099.1	diguanylate cyclase AdrA	100.0	31.9	78.0
MGA_593	LOCUS_05900	sequence02:40488..40685(+)	frameshift,internal_stop_codon	40440..40442(+)	40652	WP_000484099.1	diguanylate cyclase AdrA	84.6	14.9	87.3
MGA_594	LOCUS_05910	sequence02:40754..40987(+)	frameshift		40652	WP_000484099.1	diguanylate cyclase AdrA	100.0	20.8	92.2
MGA_664	LOCUS_06610	sequence02:114774..115862(+)	partial			WP_010942354.1	site-specific integrase	62.2	42.3	37.1
MGA_733	LOCUS_07300	sequence02:188767..188982(-)	frameshift		188862	WP_000948632.1	fimbria biosynthesis transcriptional regulator FimW	56.3	20.2	85.0
MGA_734	LOCUS_07310	sequence02:189328..189621(-)	partial			WP_001350488.1	site-specific integrase	100.0	25.1	94.8
MGA_737	LOCUS_07340	sequence02:191967..192215(+)	frameshift		191949	WP_011069533.1	IS66-like element ISSfl3 family transposase	100.0	15.4	74.4
MGA_738	LOCUS_07350	sequence02:192697..193137(-)	partial			WP_121576702.1	IS3 family transposase	100.0	39.6	87.7
MGA_739	LOCUS_07360	sequence02:193299..193547(+)	partial			WP_000158843.1	glycosyl hydrolase 108 family protein	90.2	41.7	58.7
MGA_740	LOCUS_07370	sequence02:193739..194116(-)	partial			WP_024265566.1	DUF1353 domain-containing protein	76.8	52.4	38.1
MGA_744	LOCUS_07410	sequence02:197549..197899(+)	frameshift		197549	WP_025381298.1	IS630 family transposase	68.1	23.0	65.8
MGA_811	LOCUS_08080	sequence02:274774..275088(-)	partial			WP_000939753.1	fluoride efflux transporter CrcB	87.5	71.7	100.0
MGA_852	LOCUS_08490	sequence02:320420..321085(-)	partial			WP_000811143.1	tricarballylate utilization protein TcuB	100.0	58.3	88.2
MGA_853	LOCUS_08500	sequence02:321123..321572(-)	partial			WP_000423368.1	tricarballylate utilization LysR family transcriptional regulator TcuR	95.3	46.1	95.1
MGA_882	LOCUS_08790	sequence02:354234..354479(+)	frameshift,internal_stop_codon	354220..354222(+)	354192	WP_001333072.1	hypothetical protein	42.0	55.7	73.5
MGA_884	LOCUS_08810	sequence02:355271..355618(+)	partial			WP_000254356.1	succinate dehydrogenase membrane anchor subunit	72.2	72.2	97.6
MGA_891	LOCUS_08880	sequence02:365112..365624(+)	partial			WP_005168458.1	regulatory protein PocR	95.3	55.0	39.4
MGA_909	LOCUS_09060	sequence02:383228..384418(+)	partial			WP_000030559.1	cell envelope integrity protein TolA	34.6	36.4	95.6
MGA_943	LOCUS_09400	sequence02:421301..421582(-)	frameshift		421315	WP_152858326.1	IS3 family transposase	95.7	22.7	97.8
MGA_944	LOCUS_09410	sequence02:422238..422585(+)	internal_stop_codon	422172..422174(+)		WP_052123654.1	fimbrial protein	99.1	33.6	36.8
MGA_1027	LOCUS_10240	sequence02:517773..518756(+)	frameshift		518606	WP_000996054.1	putrescine ABC transporter ATP-binding subunit PotG	85.0	73.7	97.5
MGA_1028	LOCUS_10250	sequence02:518660..518887(+)	frameshift		518606	WP_000996054.1	putrescine ABC transporter ATP-binding subunit PotG	100.0	19.9	98.7
MGA_1042	LOCUS_10390	sequence02:530790..531044(-)	partial			WP_120816036.1	site-specific integrase	89.3	17.4	74.7
MGA_1061	LOCUS_10570	sequence03:17800..18009(-)	partial			WP_001237031.1	DUF4060 family protein	73.9	64.6	72.5
MGA_1065	LOCUS_10610	sequence03:20061..20480(-)	partial			WP_000268883.1	prophage tail fiber N-terminal domain-containing protein	100.0	17.4	51.5
MGA_1066	LOCUS_10620	sequence03:21296..22726(+)	partial			WP_001115839.1	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	99.2	62.1	70.9
MGA_1067	LOCUS_10630	sequence03:22809..23225(+)	partial			WP_015705677.1	Y-family DNA polymerase	43.5	14.3	53.3
MGA_1078	LOCUS_10740	sequence03:32379..32684(+)	frameshift		32343	WP_000361665.1	PTS transporter subunit EIIC	52.5	12.8	84.5
MGA_1133	LOCUS_11290	sequence03:101008..101250(-)	partial			WP_074846341.1	DUF6402 family protein	83.8	21.4	37.3
MGA_1137	LOCUS_11330	sequence03:103682..104374(-)	frameshift		104478	WP_009936261.1	glycine zipper family protein	96.5	75.0	56.3
MGA_1141	LOCUS_11370	sequence03:108918..109073(+)	frameshift,internal_stop_codon	109059..109061(+),109056..109058(+)	109217,109043,109061,109207,109208,108889,109067,109064	WP_001212716.1	tetratricopeptide repeat protein	94.1	9.4	70.8
MGA_1142	LOCUS_11380	sequence03:109070..109330(+)	frameshift,internal_stop_codon	109059..109061(+),109056..109058(+)	109217,109043,109061,109208,108889,109067,109064	WP_001212716.1	tetratricopeptide repeat protein	50.0	8.6	72.7
MGA_1171	LOCUS_11670	sequence03:145165..145398(-)	partial			WP_000673295.1	penicillin binding protein PBP4B	100.0	17.8	96.1
MGA_1215	LOCUS_12110	sequence03:188853..189245(-)	frameshift,internal_stop_codon	188852..188854(-)	189337	WP_001263738.1	GMP synthase	99.2	54.0	88.4
MGA_1216	LOCUS_12120	sequence03:189272..189499(-)	frameshift		189337	WP_001263738.1	GMP synthase	72.0	22.6	87.0
MGA_1225	LOCUS_12210	sequence03:197219..198199(+)	partial			WP_000983126.1	cell division protein ZipA	53.7	53.4	92.6
MGA_1229	LOCUS_12250	sequence03:201767..202186(+)	partial			WP_001109834.1	LysR family transcriptional regulator	100.0	45.1	93.5
MGA_1250	LOCUS_12460	sequence03:228266..228928(-)	partial			WP_000955756.1	phosphoglycerate transporter PgtP	100.0	47.7	96.8
MGA_1251	LOCUS_12470	sequence03:229228..229572(-)	frameshift		229244,229628	WP_000955756.1	phosphoglycerate transporter PgtP	100.0	24.6	90.4
MGA_1252	LOCUS_12480	sequence03:230196..230396(+)	internal_stop_codon	230139..230141(+)		WP_000467983.1	phosphoglycerate transport regulator PgtC	98.5	16.4	98.5
MGA_1253	LOCUS_12490	sequence03:230396..230950(+)	internal_stop_codon	230948..230950(+)		WP_000930841.1	two-component system response regulator PgtA	100.0	44.3	91.8
MGA_1254	LOCUS_12500	sequence03:231014..231301(+)	internal_stop_codon	230948..230950(+)		WP_000930841.1	two-component system response regulator PgtA	100.0	22.9	90.5
MGA_1256	LOCUS_12520	sequence03:232679..232900(-)	frameshift		233108	WP_000917281.1	type III secretion system effector SopF	98.6	19.3	77.8
MGA_1257	LOCUS_12530	sequence03:233070..233423(-)	frameshift		233107,233485	WP_000917281.1	type III secretion system effector SopF	87.2	27.3	87.3
MGA_1258	LOCUS_12540	sequence03:233480..233806(-)	frameshift		233485	WP_000917281.1	type III secretion system effector SopF	99.1	28.6	77.6
MGA_1260	LOCUS_12560	sequence03:234731..234973(+)	frameshift		234725	WP_005084748.1	IS3 family transposase	98.8	28.3	86.1
MGA_1261	LOCUS_12570	sequence03:235447..235959(+)	partial			WP_010927823.1	LysR substrate-binding domain-containing protein	97.6	56.4	40.1
MGA_1262	LOCUS_12580	sequence03:236237..236596(-)	frameshift		236272,236088	WP_014208011.1	sulfite exporter TauE/SafE family protein	92.4	47.2	50.5
MGA_1354	LOCUS_13500	sequence03:330410..330754(-)	partial			WP_000538693.1	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF	68.4	62.4	74.4
MGA_1356	LOCUS_13520	sequence03:332619..333839(-)	partial			WP_001279286.1	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	53.0	57.0	87.5
MGA_1402	LOCUS_13960	sequence04:7095..7691(-)	partial			WP_000861345.1	peptidylprolyl isomerase	74.7	75.5	100.0
MGA_1462	LOCUS_14560	sequence04:68345..68533(+)	internal_stop_codon	68531..68533(+)		WP_000235943.1	Rpn family recombination-promoting nuclease/putative transposase	100.0	20.1	88.7
MGA_1463	LOCUS_14570	sequence04:68591..68776(+)	internal_stop_codon	68531..68533(+)		WP_000235943.1	Rpn family recombination-promoting nuclease/putative transposase	100.0	21.1	83.1
MGA_1466	LOCUS_14600	sequence04:69856..70308(+)	partial			WP_000958739.1	DNA utilization protein GntX	100.0	66.1	88.7
MGA_1482	LOCUS_14760	sequence04:95750..96079(-)	partial			WP_000105950.1	gluconate transporter	85.3	20.9	86.0
MGA_1514	LOCUS_15080	sequence04:127825..128046(-)	frameshift		128168,128177,128051	WP_001576500.1	MFS transporter	100.0	17.4	84.9
MGA_1515	LOCUS_15090	sequence04:128033..128179(-)	frameshift		128168,128177,128051	WP_001576500.1	MFS transporter	68.8	7.9	93.9
MGA_1517	LOCUS_15110	sequence04:128471..128926(-)	frameshift		128921,128569	WP_001576500.1	MFS transporter	72.2	26.0	86.2
MGA_1530	LOCUS_15240	sequence04:142919..144190(-)	partial			WP_011030909.1	glycoside hydrolase family 92 protein	83.2	16.0	29.8
MGA_1573	LOCUS_15670	sequence04:200600..201058(+)	partial			WP_000804690.1	glyoxylate/hydroxypyruvate reductase GhrB	94.7	44.4	94.4
MGA_1580	LOCUS_15740	sequence04:206258..206461(-)	frameshift,internal_stop_codon	206183..206185(-)	206275	WP_100249962.1	IS3 family transposase	98.5	14.5	87.9
MGA_1589	LOCUS_15830	sequence04:216423..216995(-)	partial			WP_010989268.1	protein bax	100.0	69.3	95.8
MGA_1590	LOCUS_15840	sequence04:217564..217899(+)	partial			WP_000761327.1	alpha-amylase	84.7	13.9	87.2
MGA_1666	LOCUS_16600	sequence04:299960..305176(+)	partial			WP_013097618.1	inverse autotransporter beta-barrel domain-containing protein	67.8	84.7	41.3
MGA_1672	LOCUS_16660	sequence04:314644..315126(+)	internal_stop_codon	314635..314637(+)		WP_000535970.1	EamA family transporter	96.2	51.3	96.8
MGA_1694	LOCUS_16880	sequence04:336753..337076(+)	frameshift		336702	WP_000511287.1	protein YidI	98.1	70.5	59.0
MGA_1708	LOCUS_17010	sequence05:9726..10616(-)	partial			WP_000921674.1	AraC family transcriptional regulator	33.8	34.4	41.0
MGA_1713	LOCUS_17060	sequence05:14705..14971(+)	frameshift,internal_stop_codon	14687..14689(+)	14944	WP_000958574.1	glutathione S-transferase	90.9	36.0	83.8
MGA_1714	LOCUS_17070	sequence05:14962..15267(+)	frameshift,internal_stop_codon	14687..14689(+)	14944	WP_000958574.1	glutathione S-transferase	99.0	45.0	88.0
MGA_1727	LOCUS_17200	sequence05:29177..30913(+)	frameshift		30910	WP_000551709.1	heme lyase NrfEFG subunit NrfEF	99.7	77.8	81.9
MGA_1728	LOCUS_17210	sequence05:30903..31367(+)	frameshift		30910	WP_000551709.1	heme lyase NrfEFG subunit NrfEF	81.2	16.8	75.2
MGA_1733	LOCUS_17260	sequence05:34569..34763(-)	partial			WP_010989279.1	formate dehydrogenase N subunit alpha, selenocysteine-containing	100.0	9.0	100.0
MGA_1769	LOCUS_17610	sequence05:71054..72394(+)	partial			WP_002485207.1	peptide ABC transporter substrate-binding protein	40.4	38.4	26.3
MGA_1770	LOCUS_17620	sequence05:72384..73352(+)	partial			WP_012584006.1	sulfur carrier protein ThiS adenylyltransferase ThiF	39.1	62.0	41.3
MGA_1786	LOCUS_17780	sequence05:92737..102321(-)	partial			WP_000052484.1	Ig-like domain-containing protein	91.8	43.1	26.2
MGA_1795	LOCUS_17870	sequence05:110781..111080(+)	partial			WP_089600859.1	IS3 family transposase	84.8	22.0	89.3
MGA_1800	LOCUS_17920	sequence05:114614..118807(+)	partial			WP_011391500.1	hypothetical protein	72.0	65.8	30.2
MGA_1803	LOCUS_17950	sequence05:120719..121273(+)	frameshift		121117	WP_000511773.1	integrase domain-containing protein	67.9	43.2	60.3
MGA_1804	LOCUS_17960	sequence05:121242..121601(+)	frameshift		121117	WP_000511749.1	integrase domain-containing protein	98.3	45.0	71.8
MGA_1816	LOCUS_18080	sequence05:134028..134675(-)	frameshift		134704,134062	WP_001229237.1	YjeJ family protein	94.0	70.9	91.6
MGA_1817	LOCUS_18090	sequence05:134642..134899(-)	frameshift		134704	WP_001229237.1	YjeJ family protein	91.8	27.4	80.8
MGA_1830	LOCUS_18220	sequence05:145493..145654(+)	frameshift		145633	WP_000342867.1	protein YjeN	88.7	46.2	62.5
MGA_1831	LOCUS_18230	sequence05:145636..145812(+)	frameshift		145633	WP_000342867.1	protein YjeN	89.7	50.0	75.0
MGA_1852	LOCUS_18440	sequence05:171260..171451(+)	frameshift,internal_stop_codon	171193..171195(+)	171120,171144	WP_000312608.1	DUF2170 family protein	100.0	47.0	85.7
MGA_1853	LOCUS_18450	sequence05:171484..171753(+)	partial			WP_000511966.1	PspA/IM30 family protein	76.4	29.3	89.7
MGA_1854	LOCUS_18460	sequence05:171764..171961(+)	partial			WP_000547734.1	DUF350 domain-containing protein	100.0	49.2	92.3
MGA_1855	LOCUS_18470	sequence05:171958..172122(+)	partial			WP_000943948.1	glutathionylspermidine synthase family protein	100.0	14.0	98.1
MGA_1890	LOCUS_18820	sequence05:204885..206096(+)	partial			WP_000065933.1	Hcp1 family type VI secretion system effector	55.8	58.4	65.1
MGA_1901	LOCUS_18930	sequence05:213713..213934(+)	partial			WP_010989308.1	BglG family transcription antiterminator	100.0	11.1	95.9
MGA_1906	LOCUS_18980	sequence05:217905..218138(-)	frameshift,internal_stop_codon	217905..217907(-)	218406,217790	WP_000155051.1	alpha,alpha-phosphotrehalase	100.0	14.0	81.8
MGA_1907	LOCUS_18990	sequence05:218084..218287(-)	frameshift,internal_stop_codon	217905..217907(-)	218406	WP_015704208.1	alpha,alpha-phosphotrehalase	77.6	9.3	59.6
MGA_1908	LOCUS_19000	sequence05:218395..219063(-)	frameshift		218415	WP_000155051.1	alpha,alpha-phosphotrehalase	100.0	42.4	86.7
MGA_1909	LOCUS_19010	sequence05:219329..219841(-)	frameshift		219460,220118,219238	WP_001407733.1	PTS trehalose transporter subunit IIBC	74.7	26.8	87.4
MGA_1910	LOCUS_19020	sequence05:219802..220104(-)	frameshift		220118	WP_011378955.1	PTS trehalose transporter subunit IIBC	86.0	18.2	86.0
MGA_1911	LOCUS_19030	sequence05:220101..220433(-)	frameshift		220118	WP_000048822.1	PTS trehalose transporter subunit IIBC	85.5	19.9	85.1
MGA_1923	LOCUS_19150	sequence05:232979..233278(+)	partial			WP_000635207.1	YhcH/YjgK/YiaL family protein	70.7	46.7	87.1
MGA_1927	LOCUS_19190	sequence05:235970..236284(-)	partial			WP_001519079.1	GNAT family N-acetyltransferase	100.0	62.3	94.2
MGA_1932	LOCUS_19240	sequence05:239583..240092(+)	partial			WP_001066967.1	YjgN family protein	96.4	41.3	85.3
MGA_1939	LOCUS_19310	sequence05:249411..250016(-)	partial			WP_001244064.1	LacI family DNA-binding transcriptional regulator	71.6	44.0	93.8
MGA_1940	LOCUS_19320	sequence05:250037..250771(-)	frameshift		250051	WP_001128336.1	gnt-II system L-idonate transporter	50.8	28.2	82.3
MGA_1941	LOCUS_19330	sequence05:250913..251209(-)	frameshift		250930	WP_001197416.1	L-idonate 5-dehydrogenase	93.9	26.8	80.4
MGA_1944	LOCUS_19360	sequence05:253678..253905(-)	internal_stop_codon	253915..253917(-)		WP_000142493.1	site-specific integrase	100.0	24.4	94.7
MGA_1945	LOCUS_19370	sequence05:253915..254253(-)	internal_stop_codon	254272..254274(-),253915..253917(-)		WP_000142493.1	site-specific integrase	100.0	36.4	97.3
MGA_1946	LOCUS_19380	sequence05:254272..254604(-)	internal_stop_codon	254272..254274(-)		WP_000142493.1	site-specific integrase	100.0	35.7	97.3
MGA_1956	LOCUS_19480	sequence05:264717..266018(-)	partial			WP_003243883.1	metallophosphoesterase	72.3	63.6	22.2
MGA_1963	LOCUS_19550	sequence05:273640..274932(+)	partial			WP_047813188.1	arylsulfatase	94.9	66.8	28.9
MGA_1969	LOCUS_19610	sequence05:280496..280756(-)	partial			WP_002210175.1	helix-turn-helix transcriptional regulator	77.9	73.6	74.6
MGA_1970	LOCUS_19620	sequence05:280866..281129(+)	partial			WP_000175313.1	helix-turn-helix transcriptional regulator	87.4	50.0	39.5
MGA_1971	LOCUS_19630	sequence05:281169..281390(+)	partial			WP_000175313.1	helix-turn-helix transcriptional regulator	82.2	39.5	53.3
MGA_1975	LOCUS_19660	sequence06:116..610(+)	frameshift		562	WP_005084748.1	IS3 family transposase	90.9	53.4	92.6
MGA_1976	LOCUS_19670	sequence06:586..792(+)	frameshift		562	WP_085929673.1	IS3-like element ISEc52 family transposase	97.1	17.0	89.4
MGA_2009	LOCUS_20000	sequence06:35107..35439(+)	partial			WP_001361954.1	YchJ family protein	86.4	62.5	75.8
MGA_2044	LOCUS_20350	sequence06:74155..74295(-)	frameshift,internal_stop_codon	74160..74162(-),74148..74150(-),74088..74090(-),74145..74147(-)	74084,74172,74126	WP_002209876.1	tagatose-bisphosphate aldolase subunit KbaZ	87.0	9.3	75.0
MGA_2116	LOCUS_21070	sequence06:147543..148541(+)	partial			WP_001147139.1	type III secretion system effector SteA	46.4	74.3	44.9
MGA_2182	LOCUS_21730	sequence06:215087..215299(-)	partial			WP_000100203.1	arabinose ABC transporter permease AraH	100.0	21.3	87.1
MGA_2212	LOCUS_22030	sequence06:240767..241135(+)	partial			WP_000795470.1	alpha-amylase	99.2	24.5	92.6
MGA_2241	LOCUS_22320	sequence06:264057..264467(-)	frameshift,internal_stop_codon	264587..264589(-),264056..264058(-)	264553	WP_000377043.1	phosphohydrolase	100.0	58.9	91.2
MGA_2243	LOCUS_22340	sequence06:265993..266520(+)	frameshift,internal_stop_codon	265792..265794(+),265990..265992(+)	265748,266487	WP_001080666.1	porin OmpS1	94.9	43.1	78.2
MGA_2244	LOCUS_22350	sequence06:266503..266691(-)	partial			WP_004166231.1	helix-turn-helix domain-containing protein	98.4	64.9	49.2
MGA_2248	LOCUS_22390	sequence06:269321..270187(-)	frameshift		270222	WP_085954962.1	IS3 family transposase	100.0	74.2	84.7
MGA_2250	LOCUS_22410	sequence06:270977..271165(-)	frameshift,internal_stop_codon	270997..270999(-)	270882,271006	WP_000059623.1	tyrosine-type recombinase/integrase	98.4	13.6	50.8
MGA_2285	LOCUS_22750	sequence07:23428..24090(-)	internal_stop_codon	24100..24102(-)		WP_001115424.1	transcriptional regulator LeuO	100.0	70.1	93.6
MGA_2286	LOCUS_22760	sequence07:24100..24372(-)	internal_stop_codon	24100..24102(-)		WP_001115424.1	transcriptional regulator LeuO	100.0	28.7	98.9
MGA_2327	LOCUS_23170	sequence07:73306..75195(-)	partial			WP_005089485.1	sulfatase-like hydrolase/transferase	58.7	60.0	29.3
MGA_2365	LOCUS_23550	sequence07:118065..118934(-)	frameshift		119064	WP_015704341.1	chitinase	99.7	28.2	75.0
MGA_2366	LOCUS_23560	sequence07:119032..119337(-)	frameshift		118938	WP_015704341.1	chitinase	90.1	8.9	69.2
MGA_2367	LOCUS_23570	sequence07:119429..121003(-)	frameshift		121004	WP_015704340.1	glycosyl hydrolase family 18 protein	100.0	75.9	76.8
MGA_2368	LOCUS_23580	sequence07:120996..121514(-)	frameshift		121010	WP_015704710.1	glycosyl hydrolase family 18 protein	99.4	24.1	81.9
MGA_2375	LOCUS_23650	sequence07:128320..128841(-)	partial			WP_013096884.1	recombinase family protein	94.8	28.9	45.9
MGA_2387	LOCUS_23770	sequence07:141843..142106(-)	frameshift,internal_stop_codon	142119..142121(-)	142296	WP_001187043.1	two-component system response regulator CreB	98.9	37.6	83.7
MGA_2388	LOCUS_23780	sequence07:142119..142262(-)	frameshift,internal_stop_codon	142118..142120(-),142422..142424(-)	142466,142295	WP_001250764.1	two-component system response regulator CreB	95.7	19.7	73.3
MGA_2406	LOCUS_23960	sequence07:161729..162316(+)	partial			WP_001064935.1	YjjW family glycine radical enzyme activase	100.0	67.9	90.8
MGA_2420	LOCUS_24100	sequence07:173680..173904(-)	partial			WP_000431550.1	DNA-binding transcriptional activator BglJ	100.0	33.0	95.9
MGA_2438	LOCUS_24280	sequence07:194637..195188(+)	frameshift		194592	WP_013095437.1	AraC family transcriptional regulator	92.9	66.0	54.4
MGA_2443	LOCUS_24330	sequence07:199206..199802(-)	frameshift		199992,199836	WP_000749985.1	Rpn family recombination-promoting nuclease/putative transposase	100.0	62.9	95.5
MGA_2444	LOCUS_24340	sequence07:199954..200157(-)	frameshift		199992,199836	WP_000749985.1	Rpn family recombination-promoting nuclease/putative transposase	82.1	17.1	98.2
MGA_2454	LOCUS_24440	sequence07:210995..211174(+)	frameshift,internal_stop_codon	211173..211175(+),211200..211202(+)	210935	WP_001094618.1	tryptophan--tRNA ligase	100.0	17.5	78.0
MGA_2460	LOCUS_24500	sequence07:215140..215703(-)	frameshift		215872	WP_089600859.1	IS3 family transposase	77.0	37.7	95.1
MGA_2463	LOCUS_24520	sequence08:123..854(-)	frameshift		1104,711	WP_089600859.1	IS3 family transposase	67.9	43.2	95.2
MGA_2472	LOCUS_24610	sequence08:5005..5142(-)	frameshift,internal_stop_codon	5250..5252(-)	5237,5182	WP_015369577.1	transcriptional regulator ExuR	100.0	17.4	84.4
MGA_2505	LOCUS_24940	sequence08:44327..44941(+)	partial			WP_000245226.1	4,5-DOPA dioxygenase extradiol	77.0	56.9	92.4
MGA_2536	LOCUS_25250	sequence08:75460..75744(+)	frameshift		75448,75745,75512,75708	WP_000439337.1	TIGR00645 family protein	74.5	42.7	94.3
MGA_2537	LOCUS_25260	sequence08:75745..75915(+)	frameshift		75512,75745,75708	WP_005051898.1	TIGR00645 family protein	100.0	34.1	98.2
MGA_2549	LOCUS_25380	sequence08:86311..86583(+)	internal_stop_codon	86581..86583(+)		WP_000033690.1	bifunctional glutathionylspermidine amidase/synthase	100.0	14.6	95.6
MGA_2550	LOCUS_25390	sequence08:86587..88170(+)	internal_stop_codon	86581..86583(+)		WP_000033690.1	bifunctional glutathionylspermidine amidase/synthase	99.8	85.0	98.3
MGA_2553	LOCUS_25420	sequence08:90172..91125(-)	frameshift		91147	WP_000190176.1	glucuronate isomerase	100.0	67.4	96.8
MGA_2554	LOCUS_25430	sequence08:91046..91585(-)	frameshift		91147	WP_000190176.1	glucuronate isomerase	81.6	31.1	97.9
MGA_2560	LOCUS_25490	sequence08:99246..99494(+)	partial			WP_000338756.1	Hcp family type VI secretion system effector	51.2	26.1	78.6
MGA_2561	LOCUS_25500	sequence08:99497..99874(+)	partial			WP_001301619.1	anti-adapter protein IraD	78.4	72.3	49.0
MGA_2577	LOCUS_25660	sequence08:119988..121211(+)	partial			WP_011266335.1	RHS repeat-associated core domain-containing protein	34.6	43.2	44.2
MGA_2579	LOCUS_25680	sequence08:121938..122180(+)	partial			WP_000246267.1	hypothetical protein	98.8	51.6	68.4
MGA_2582	LOCUS_25710	sequence08:124169..124312(+)	internal_stop_codon	124310..124312(+)		WP_000511749.1	integrase domain-containing protein	100.0	18.8	69.4
MGA_2583	LOCUS_25720	sequence08:124322..124765(+)	frameshift,internal_stop_codon	124310..124312(+)	124801,124708	WP_000511749.1	integrase domain-containing protein	87.1	61.9	50.9
MGA_2658	LOCUS_26470	sequence08:202555..203436(+)	frameshift		202412	WP_010989230.1	peptide chain release factor 2	100.0	80.3	99.0
MGA_2663	LOCUS_26520	sequence08:207570..208727(-)	partial			WP_013097669.1	PAAR domain-containing protein	32.7	27.4	36.2
MGA_2664	LOCUS_26530	sequence08:208907..209230(-)	internal_stop_codon	208907..208909(-)		WP_032642195.1	hypothetical protein	95.3	64.0	41.7
MGA_2677	LOCUS_26660	sequence09:12735..13046(+)	internal_stop_codon	13044..13046(+)		WP_001212373.1	YfiR family protein	85.4	51.2	83.0
MGA_2678	LOCUS_26670	sequence09:13050..13253(+)	internal_stop_codon	13044..13046(+)		WP_001212373.1	YfiR family protein	97.0	37.8	90.8
MGA_2679	LOCUS_26680	sequence09:13315..14001(+)	frameshift		13980	WP_001030993.1	diguanylate cyclase DgcN	96.5	54.2	92.3
MGA_2680	LOCUS_26690	sequence09:14049..14465(+)	frameshift		13980	WP_001030993.1	diguanylate cyclase DgcN	100.0	34.0	89.1
MGA_2701	LOCUS_26900	sequence09:46044..46676(-)	partial			WP_011817289.1	IS4 family transposase	100.0	52.9	81.9
MGA_2702	LOCUS_26910	sequence09:47049..47237(-)	internal_stop_codon	47049..47051(-)		WP_011817289.1	IS4 family transposase	100.0	15.6	93.5
MGA_2703	LOCUS_26920	sequence09:48173..48499(-)	partial			WP_000905001.1	site-specific DNA recombinase	89.8	52.7	87.6
MGA_2802	LOCUS_27910	sequence09:149315..150196(-)	frameshift,internal_stop_codon	149309..149311(-)	149320,149110,149182	WP_000946989.1	SPI-1 type III secretion system effector GTPase-activating protein SptP	99.7	53.4	66.1
MGA_2817	LOCUS_28060	sequence09:162722..163066(-)	partial			WP_000555884.1	SPI-1 type III secretion system protein SpaM	85.1	66.0	86.6
MGA_2852	LOCUS_28410	sequence10:31709..35623(+)	partial			WP_000076972.1	DNA translocase FtsK	56.2	53.8	78.0
MGA_2859	LOCUS_28480	sequence10:43842..44018(-)	frameshift,internal_stop_codon	43664..43666(-),43799..43801(-),43592..43594(-)	43847	WP_000165879.1	isochorismate family cysteine hydrolase YcaC	91.4	25.5	83.0
MGA_2872	LOCUS_28610	sequence10:59231..59440(+)	frameshift		59162	WP_000792300.1	M48 family metallopeptidase	72.5	19.8	80.0
MGA_2879	LOCUS_28680	sequence10:67995..68456(+)	frameshift,internal_stop_codon	67981..67983(+)	67980	WP_013097301.1	winged helix-turn-helix domain-containing protein	92.2	34.5	80.9
MGA_2893	LOCUS_28820	sequence10:85638..85766(+)	partial			WP_011069266.1	IS4-like element IS4 family transposase	85.7	8.0	94.4
MGA_2894	LOCUS_28830	sequence10:85775..86134(+)	partial			WP_000547191.1	IS4-like element IS4 family transposase	100.0	26.9	91.6
MGA_2897	LOCUS_28860	sequence10:89563..89775(+)	frameshift		89581,89767	WP_001698950.1	tail fiber assembly protein	91.4	33.5	59.4
MGA_2898	LOCUS_28870	sequence10:89763..89930(+)	frameshift		89581,89767	WP_000885629.1	tail fiber assembly protein	94.5	26.9	51.9
MGA_2900	LOCUS_28890	sequence10:90691..90951(+)	partial			WP_000457648.1	Y-family DNA polymerase	74.4	15.2	76.6
MGA_2915	LOCUS_29040	sequence10:109544..109924(-)	partial			WP_000288732.1	cell division inhibitor SulA	100.0	74.6	92.1
MGA_2928	LOCUS_29170	sequence10:122405..122611(-)	internal_stop_codon	122405..122407(-)		WP_015370386.1	hypothetical protein	100.0	61.8	61.8
MGA_2930	LOCUS_29190	sequence10:123255..123593(-)	partial			WP_013095191.1	arsenical resistance protein ArsH	71.4	33.3	67.5
MGA_2931	LOCUS_29200	sequence10:123614..123970(+)	frameshift		123958	WP_012540054.1	arsenite efflux transporter membrane subunit ArsB	96.6	26.6	85.1
MGA_2932	LOCUS_29210	sequence10:124115..124324(+)	frameshift		123958	WP_012540054.1	arsenite efflux transporter membrane subunit ArsB	72.5	11.7	94.0
MGA_2974	LOCUS_29630	sequence11:1..1777(+)	partial			WP_009941345.1	N-acetylmuramidase family protein	30.6	68.9	33.3
MGA_2977	LOCUS_29660	sequence11:2633..2848(-)	frameshift		2945	WP_121576702.1	IS3 family transposase	100.0	19.2	80.3
MGA_2978	LOCUS_29670	sequence11:2937..3449(-)	frameshift		2947,3478	WP_121576702.1	IS3 family transposase	98.8	45.5	79.8
MGA_2979	LOCUS_29680	sequence11:3473..3739(-)	frameshift		3478	WP_121576702.1	IS3 family transposase	98.9	23.6	93.1
MGA_2992	LOCUS_29810	sequence11:18704..19144(-)	frameshift,internal_stop_codon	19232..19234(-)	18718	WP_011817289.1	IS4 family transposase	97.9	36.0	82.5
MGA_2993	LOCUS_29820	sequence11:19232..19606(-)	internal_stop_codon	19232..19234(-)		WP_011817289.1	IS4 family transposase	99.2	31.0	89.4
MGA_3069	LOCUS_30580	sequence11:97016..97417(+)	frameshift		97306	WP_000184299.1	PDDEXK nuclease domain-containing protein	73.7	26.7	98.0
MGA_3070	LOCUS_30590	sequence11:97399..98088(+)	frameshift		97306	WP_000184299.1	PDDEXK nuclease domain-containing protein	99.1	61.9	87.2
MGA_3094	LOCUS_30830	sequence11:119795..119998(-)	frameshift,internal_stop_codon	120037..120039(-)	120045	WP_001116614.1	p-hydroxybenzoic acid efflux pump operon protein AaeX	100.0	74.4	100.0
MGA_3109	LOCUS_30980	sequence11:139187..141121(+)	partial			WP_000038372.1	putative mucin/carbohydrate-binding domain-containing protein	25.8	11.9	34.5
MGA_3113	LOCUS_31020	sequence11:143947..144591(+)	partial			WP_002268260.1	carbonic anhydrase family protein	81.3	67.6	35.6
MGA_3118	LOCUS_31070	sequence11:147628..148065(+)	frameshift		148214	WP_013098998.1	bifunctional diguanylate cyclase/phosphodiesterase	100.0	20.9	56.6
MGA_3119	LOCUS_31080	sequence11:148047..148304(+)	partial			WP_013098998.1	bifunctional diguanylate cyclase/phosphodiesterase	70.6	8.7	61.7
MGA_3147	LOCUS_31360	sequence12:28312..28629(-)	partial			WP_000956036.1	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	91.4	23.4	85.4
MGA_3148	LOCUS_31370	sequence12:28620..29438(-)	frameshift		29467	WP_121576702.1	IS3 family transposase	100.0	73.7	80.9
MGA_3149	LOCUS_31380	sequence12:29462..29728(-)	frameshift		29467	WP_121576702.1	IS3 family transposase	98.9	23.6	92.0
MGA_3150	LOCUS_31390	sequence12:30035..30160(+)	internal_stop_codon	29984..29986(+)		WP_000813638.1	type II toxin-antitoxin system antitoxin CcdA	100.0	56.9	90.2
MGA_3151	LOCUS_31400	sequence12:30243..30401(+)	internal_stop_codon	30210..30212(+)		WP_001159868.1	type II toxin-antitoxin system toxin CcdB	71.2	36.6	83.8
MGA_3156	LOCUS_31450	sequence12:33605..34051(+)	partial			WP_046092923.1	IS630-like element ISEc33 family transposase	93.9	40.5	86.3
MGA_3161	LOCUS_31500	sequence12:38627..39166(-)	internal_stop_codon	39338..39340(-)		WP_000024658.1	LysR substrate-binding domain-containing protein	100.0	59.3	91.6
MGA_3162	LOCUS_31510	sequence12:39338..39535(-)	internal_stop_codon	39338..39340(-)		WP_000024658.1	LysR substrate-binding domain-containing protein	100.0	21.5	96.9
MGA_3163	LOCUS_31520	sequence12:39661..40038(+)	internal_stop_codon	40036..40038(+)		WP_000194222.1	aromatic acid/H+ symport family MFS transporter	88.8	24.6	86.5
MGA_3164	LOCUS_31530	sequence12:40042..40233(+)	internal_stop_codon	40036..40038(+)		WP_000194222.1	aromatic acid/H+ symport family MFS transporter	55.6	7.7	94.3
MGA_3201	LOCUS_31900	sequence12:80730..81128(-)	partial			WP_000134351.1	MFS transporter	86.4	24.9	68.4
MGA_3238	LOCUS_32270	sequence12:127499..128155(+)	partial			WP_003546270.1	glycosyltransferase	63.3	58.6	48.2
MGA_3239	LOCUS_32280	sequence12:128152..128916(+)	partial			WP_010965472.1	glycosyltransferase	81.1	64.0	35.8
MGA_3242	LOCUS_32310	sequence12:132030..132344(+)	frameshift,internal_stop_codon	132468..132470(+),132634..132636(+)	132581,132356,132293,132485	WP_000420898.1	ISAs1 family transposase	87.5	24.1	73.6
MGA_3252	LOCUS_32400	sequence13:6479..6643(+)	internal_stop_codon	6653..6655(+),6641..6643(+)		WP_000613182.1	DNA-binding transcriptional repressor YgbI	100.0	21.3	96.3
MGA_3253	LOCUS_32410	sequence13:6662..7237(+)	internal_stop_codon	6653..6655(+),6641..6643(+)		WP_000613182.1	DNA-binding transcriptional repressor YgbI	100.0	76.0	92.2
MGA_3259	LOCUS_32470	sequence13:11200..12030(-)	partial			WP_001272624.1	murein hydrolase activator NlpD	100.0	74.0	92.4
MGA_3272	LOCUS_32600	sequence13:21317..21772(-)	partial			WP_001233965.1	CRISPR-associated helicase/endonuclease Cas3	60.3	10.1	72.5
MGA_3279	LOCUS_32670	sequence13:29842..30474(-)	partial			WP_011817289.1	IS4 family transposase	100.0	52.9	81.0
MGA_3280	LOCUS_32680	sequence13:30847..31035(-)	internal_stop_codon	30847..30849(-)		WP_011817289.1	IS4 family transposase	100.0	15.6	93.5
MGA_3337	LOCUS_33250	sequence13:104052..104327(+)	partial			WP_000968342.1	LacI family DNA-binding transcriptional regulator	89.0	23.8	88.9
MGA_3340	LOCUS_33280	sequence13:106615..106839(-)	frameshift		106822	WP_000848628.1	aspartate/glutamate racemase	93.2	29.4	92.8
MGA_3341	LOCUS_33290	sequence13:106808..107176(-)	frameshift,internal_stop_codon	107288..107290(-)	106822	WP_000848628.1	aspartate/glutamate racemase	97.5	50.6	87.4
MGA_3347	LOCUS_33350	sequence13:112920..113102(-)	frameshift,internal_stop_codon	112920..112922(-)	113115	WP_001270764.1	LysR family transcriptional regulator	100.0	20.9	90.0
MGA_3348	LOCUS_33360	sequence13:113023..113265(-)	frameshift,internal_stop_codon	112920..112922(-)	113115	WP_001270764.1	LysR family transcriptional regulator	55.0	15.3	88.6
MGA_3353	LOCUS_33410	sequence13:117861..120407(+)	partial			WP_000554210.1	autotransporter YejO	36.6	35.8	54.5
MGA_3355	LOCUS_33430	sequence13:121317..121481(-)	frameshift		121633,121548	WP_000134788.1	transcriptional regulator	100.0	21.4	79.6
MGA_3356	LOCUS_33440	sequence13:121465..121743(-)	frameshift		121633,121548	WP_000134788.1	transcriptional regulator	64.1	23.4	52.5
MGA_3359	LOCUS_33470	sequence13:124205..124456(+)	partial			WP_102203946.1	IS3-like element IS911 family transposase	86.7	18.5	98.6
MGA_3366	LOCUS_33540	sequence14:10634..11149(+)	frameshift,internal_stop_codon	10620..10622(+)	10520	WP_000291541.1	lactose permease	90.1	36.9	77.3
MGA_3367	LOCUS_33550	sequence14:11106..11315(+)	partial			WP_012602186.1	galactoside O-acetyltransferase	100.0	36.9	73.3
MGA_3412	LOCUS_34000	sequence14:61761..61916(+)	partial			WP_155106970.1	hypothetical protein	100.0	49.0	54.9
MGA_3462	LOCUS_34500	sequence15:25884..26288(+)	internal_stop_codon	26286..26288(+)		WP_001134817.1	hypothetical protein	100.0	35.8	98.5
MGA_3463	LOCUS_34510	sequence15:26319..26510(+)	internal_stop_codon	26286..26288(+)		WP_001134817.1	hypothetical protein	100.0	16.8	96.8
MGA_3498	LOCUS_34860	sequence15:63223..63474(+)	internal_stop_codon	63472..63474(+)		WP_002288260.1	TRAP transporter substrate-binding protein	100.0	24.3	56.6
MGA_3499	LOCUS_34870	sequence15:63514..64023(+)	internal_stop_codon	63472..63474(+)		WP_002358408.1	TRAP transporter substrate-binding protein	95.9	54.0	44.8
MGA_3500	LOCUS_34880	sequence15:64042..64188(+)	frameshift,internal_stop_codon	64186..64188(+)	64422	WP_001091409.1	TRAP transporter small permease	100.0	28.1	91.7
MGA_3501	LOCUS_34890	sequence15:64210..64491(+)	frameshift,internal_stop_codon	64186..64188(+)	64422	WP_001091409.1	TRAP transporter small permease	77.4	42.1	91.7
MGA_3502	LOCUS_34900	sequence15:64551..65462(+)	frameshift		65423	WP_000566798.1	TRAP transporter large permease	96.0	66.9	90.7
MGA_3503	LOCUS_34910	sequence15:65437..65859(+)	frameshift		65423	WP_000566798.1	TRAP transporter large permease	100.0	32.2	95.0
MGA_3504	LOCUS_34920	sequence15:65932..66237(-)	partial			WP_000378721.1	oligogalacturonate-specific porin KdgM family protein	93.1	41.4	92.6
MGA_3517	LOCUS_35050	sequence15:77853..78032(+)	partial			WP_000584106.1	LPS export ABC transporter permease LptF	98.3	15.8	82.8
MGA_3518	LOCUS_35060	sequence15:78072..78311(+)	internal_stop_codon	78309..78311(+)		WP_005086168.1	PTS fructose-like transporter subunit IIBC	100.0	16.4	92.4
MGA_3519	LOCUS_35070	sequence15:78339..78539(+)	internal_stop_codon	78309..78311(+)		WP_000445998.1	PTS fructose-like transporter subunit IIBC	97.0	13.3	81.2
MGA_3520	LOCUS_35080	sequence15:78629..78859(+)	partial			WP_000931299.1	putative frv operon regulatory protein	88.2	11.5	80.6
MGA_3521	LOCUS_35090	sequence15:79118..79450(+)	partial			WP_000931343.1	putative frv operon regulatory protein	99.1	18.7	66.1
MGA_3524	LOCUS_35120	sequence15:81031..81657(+)	partial			WP_015705575.1	YdcK family protein	59.1	42.9	34.3
MGA_3526	LOCUS_35140	sequence15:84003..85205(+)	partial			WP_000181296.1	microcin export transporter peptidase/ATP-binding subunit MchF	100.0	57.1	68.8
MGA_3527	LOCUS_35150	sequence15:85409..85735(-)	partial			WP_005477792.1	AraC family transcriptional regulator	81.5	31.6	34.1
MGA_3529	LOCUS_35170	sequence15:86895..87722(-)	partial			WP_002225802.1	outer membrane protein assembly factor BamE	48.4	80.7	37.6
MGA_3530	LOCUS_35180	sequence15:87787..>89096(-)	partial			WP_158580290.1	YadA-like family protein	85.1	7.3	28.8
MGA_3611	LOCUS_35990	sequence17:4057..4200(+)	frameshift		4003	WP_002212753.1	tyrosine-type recombinase/integrase	97.9	11.0	58.7
MGA_3615	LOCUS_36030	sequence17:9077..10147(+)	partial			WP_000343613.1	IS256-like element ISEc39 family transposase	44.1	39.1	91.7
MGA_3616	LOCUS_36040	sequence17:10566..13493(-)	partial			WP_002211013.1	RHS repeat-associated core domain-containing protein	69.1	79.3	57.4
MGA_3673	LOCUS_36610	sequence17:65650..65787(-)	frameshift		65816	WP_000803316.1	LysR family transcriptional regulator	100.0	14.8	73.3
MGA_3674	LOCUS_36620	sequence17:65796..66371(-)	frameshift,internal_stop_codon	66420..66422(-)	65816	WP_000803316.1	LysR family transcriptional regulator	100.0	62.8	91.1
MGA_3675	LOCUS_36630	sequence17:66420..66569(-)	internal_stop_codon	66420..66422(-)		WP_000803316.1	LysR family transcriptional regulator	100.0	15.5	83.7
MGA_3773	LOCUS_37600	sequence19:34927..35313(+)	partial			WP_001323326.1	transglycosylase SLT domain-containing protein	96.9	62.0	59.7
MGA_3776	LOCUS_37630	sequence19:37358..37504(-)	partial			WP_013087182.1	hypothetical protein	100.0	72.7	68.8
MGA_3807	LOCUS_37940	sequence19:56995..57297(+)	frameshift		57264	WP_011815235.1	IS256 family transposase	90.0	22.5	86.7
MGA_3808	LOCUS_37950	sequence19:57471..57866(+)	frameshift		57264	WP_011815235.1	IS256 family transposase	100.0	32.8	89.3
MGA_3904	LOCUS_38900	sequence21:33743..34597(-)	partial			WP_010882798.1	SUMF1/EgtB/PvdO family nonheme iron enzyme	87.7	38.3	32.6
MGA_3908	LOCUS_38940	sequence21:40149..40718(-)	partial			WP_004526753.1	type VI secretion system Vgr family protein	66.7	11.9	41.7
MGA_3909	LOCUS_38950	sequence21:40733..41785(-)	internal_stop_codon	41837..41839(-)		WP_013096433.1	type VI secretion system ATPase TssH	98.3	45.3	89.8
MGA_3910	LOCUS_38960	sequence21:41837..43390(-)	internal_stop_codon	41837..41839(-)		WP_015705646.1	type VI secretion system ATPase TssH	99.4	58.3	80.2
MGA_3924	LOCUS_39100	sequence21:56550..56927(-)	frameshift,internal_stop_codon	56457..56459(-),56955..56957(-)	56576	WP_000207227.1	class I SAM-dependent methyltransferase	93.6	45.7	87.2
MGA_3928	LOCUS_39140	sequence22:1805..2377(+)	frameshift,internal_stop_codon	1764..1766(+)	1676,1790,1631	WP_014344509.1	elongation factor P-like protein YeiP	100.0	71.2	100.0
MGA_3946	LOCUS_39320	sequence22:23370..28289(+)	partial			WP_046236980.1	Tc toxin subunit A	21.2	37.8	27.2
MGA_3947	LOCUS_39330	sequence22:28384..32910(+)	partial			WP_011268803.1	neuraminidase-like domain-containing protein	55.1	53.4	38.6
MGA_3949	LOCUS_39350	sequence22:37381..40335(+)	partial			WP_011266499.1	RHS repeat-associated core domain-containing protein	68.7	68.3	39.4
MGA_3950	LOCUS_39360	sequence22:40355..43243(+)	partial			WP_011266499.1	RHS repeat-associated core domain-containing protein	70.6	68.3	41.0
MGA_3951	LOCUS_39370	sequence22:43522..46437(+)	partial			WP_002210084.1	RHS repeat-associated core domain-containing protein	69.8	70.1	39.3
MGA_3952	LOCUS_39380	sequence22:46775..47107(-)	partial			WP_013097618.1	inverse autotransporter beta-barrel domain-containing protein	35.5	2.8	61.5
MGA_3980	LOCUS_39650	sequence23:27809..28627(+)	frameshift		28402	WP_001520529.1	sugar kinase	73.5	67.1	94.0
MGA_4014	LOCUS_39970	sequence24:18138..18359(-)	frameshift		18167	WP_001343187.1	type III secretion system effector OspD3	100.0	12.9	52.1
MGA_4016	LOCUS_39990	sequence24:18709..18960(-)	frameshift		19016	WP_000953022.1	type III secretion system effector arginine glycosyltransferase NleB	94.0	23.7	66.7
MGA_4017	LOCUS_40000	sequence24:18984..19739(-)	frameshift		19016	WP_000953022.1	type III secretion system effector arginine glycosyltransferase NleB	84.1	64.1	61.6
MGA_4019	LOCUS_40020	sequence24:21395..21604(+)	frameshift,internal_stop_codon	21764..21766(+)	21345,21649,21588,21375	WP_065358496.1	IS4 family transposase	89.9	19.9	58.8
MGA_4032	LOCUS_40140	sequence25:3371..3547(+)	frameshift		3546,3138,3363	WP_002213256.1	Tn3 family transposase	100.0	7.5	89.7
MGA_4033	LOCUS_40150	sequence25:3561..4589(+)	frameshift,internal_stop_codon	4588..4590(+)	3545,3362	WP_001143760.1	Tn3-like element Tn3 family transposase	100.0	34.2	48.2
MGA_4034	LOCUS_40160	sequence25:4608..5606(+)	frameshift,internal_stop_codon	4587..4589(+)	5480	WP_002213256.1	Tn3 family transposase	88.3	38.0	91.1
MGA_4035	LOCUS_40170	sequence25:5606..6136(+)	frameshift		5477	WP_002213256.1	Tn3 family transposase	100.0	22.8	94.9
MGA_4057	LOCUS_40380	sequence26:211..537(+)	frameshift,internal_stop_codon	535..537(+)	555	WP_085929673.1	IS3-like element ISEc52 family transposase	100.0	27.8	93.5
MGA_4065	LOCUS_40460	sequence26:10618..11100(+)	internal_stop_codon	11153..11155(+)		WP_010989147.1	cyclic di-GMP phosphodiesterase	73.8	17.9	78.0
MGA_4084	LOCUS_40650	sequence26:29847..30059(+)	partial			WP_011815235.1	IS256 family transposase	90.0	15.8	79.4
MGA_4140	LOCUS_41180	sequence28:3849..4265(+)	partial			WP_011037248.1	DUF3577 domain-containing protein	44.9	68.1	58.1
MGA_4142	LOCUS_41200	sequence28:4416..4850(+)	partial			WP_013095156.1	TcpQ domain-containing protein	76.4	25.9	54.1
MGA_4146	LOCUS_41240	sequence28:6620..7027(+)	partial			WP_015038881.1	integrating conjugative element protein	85.9	65.5	53.4
MGA_4162	LOCUS_41400	sequence29:52..327(-)	frameshift		374	WP_001218809.1	integrase arm-type DNA-binding domain-containing protein	91.2	19.8	56.6
MGA_4163	LOCUS_41410	sequence29:372..764(-)	frameshift		813,374	WP_032666220.1	integrase arm-type DNA-binding domain-containing protein	99.2	29.7	53.5
MGA_4165	LOCUS_41430	sequence29:2237..2485(-)	partial			WP_000533600.1	tyrosine-type recombinase/integrase	82.9	20.0	69.1
MGA_4166	LOCUS_41440	sequence29:3201..3440(+)	frameshift,internal_stop_codon	3438..3440(+)	3458	WP_001698950.1	tail fiber assembly protein	100.0	41.4	64.6
MGA_4167	LOCUS_41450	sequence29:3464..3739(+)	frameshift,internal_stop_codon	3438..3440(+)	3458	WP_015675416.1	tail fiber assembly protein	100.0	49.2	56.5
MGA_4170	LOCUS_41480	sequence29:7553..7828(+)	internal_stop_codon	7469..7471(+),7436..7438(+)		WP_034455038.1	IS110 family transposase	82.4	23.4	78.2
MGA_4173	LOCUS_41510	sequence29:11733..12323(-)	partial			WP_010971998.1	iron ABC transporter permease	96.4	33.5	48.7
MGA_4182	LOCUS_41590	sequence30:4497..5237(+)	internal_stop_codon	5235..5237(+)		WP_001059486.1	SPI-7-type island replicative DNA helicase	100.0	54.4	52.4
MGA_4183	LOCUS_41600	sequence30:5349..5852(+)	internal_stop_codon	5235..5237(+)		WP_011817116.1	SPI-7-type island replicative DNA helicase	96.4	35.4	64.0
MGA_4184	LOCUS_41610	sequence30:5849..7333(+)	partial			WP_150625513.1	ParB family protein	64.8	57.4	49.2
MGA_4187	LOCUS_41640	sequence30:9476..10159(-)	partial			WP_011143982.1	DUF4926 domain-containing protein	25.1	74.3	56.1
MGA_4188	LOCUS_41650	sequence30:10170..11285(-)	partial			WP_001280050.1	type VI secretion system tube protein TssD	31.5	31.5	51.2
MGA_4189	LOCUS_41660	sequence31:86..1042(-)	internal_stop_codon	1148..1150(-)		WP_001143760.1	Tn3-like element Tn3 family transposase	98.7	31.4	81.5
MGA_4190	LOCUS_41670	sequence31:1148..2791(-)	internal_stop_codon	2924..2926(-),1148..1150(-)		WP_001143760.1	Tn3-like element Tn3 family transposase	99.8	54.5	62.1
MGA_4191	LOCUS_41680	sequence31:2924..3094(-)	internal_stop_codon	2924..2926(-)		WP_002213256.1	Tn3 family transposase	96.4	7.0	59.3
MGA_4200	LOCUS_41760	sequence32:2482..2694(-)	partial			WP_000186540.1	heme exporter protein CcmD	71.4	72.5	74.0
MGA_4212	LOCUS_41840	sequence34:2004..2255(+)	frameshift,internal_stop_codon	2400..2402(+)	2216,2396,2255	WP_085929673.1	IS3-like element ISEc52 family transposase	88.0	18.8	94.5
MGA_4219	LOCUS_41890	sequence37:835..1407(+)	partial			WP_011815235.1	IS256 family transposase	94.7	45.0	84.4
MGA_4283	LOCUS_42470	sequence44:59240..64456(+)	partial			WP_013097618.1	inverse autotransporter beta-barrel domain-containing protein	67.8	84.7	41.3
MGA_4289	LOCUS_42530	sequence44:73924..74406(+)	internal_stop_codon	73915..73917(+)		WP_000535970.1	EamA family transporter	96.2	51.3	96.8
MGA_4311	LOCUS_42750	sequence44:96033..96356(+)	frameshift		95982	WP_000511287.1	protein YidI	98.1	70.5	59.0
MGA_4329	LOCUS_42930	sequence45:8565..10118(+)	internal_stop_codon	10116..10118(+)		WP_015705646.1	type VI secretion system ATPase TssH	99.4	58.3	80.2
MGA_4330	LOCUS_42940	sequence45:10170..11222(+)	internal_stop_codon	10116..10118(+)		WP_013096433.1	type VI secretion system ATPase TssH	98.3	45.3	89.8
MGA_4331	LOCUS_42950	sequence45:11237..11806(+)	partial			WP_004526753.1	type VI secretion system Vgr family protein	66.7	11.9	41.7
MGA_4335	LOCUS_42990	sequence45:17358..18212(+)	partial			WP_010882798.1	SUMF1/EgtB/PvdO family nonheme iron enzyme	87.7	38.3	32.6