{ "type": "genome", "identifier": "GCF_016031655.1", "organism": "Bradyrhizobium glycinis", "title": "Bradyrhizobium glycinis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Empresa Brasileira de Pesquisa Agropecuaria", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016031655.1", "bioproject": "PRJNA224116", "biosample": "SAMN15496426", "wgs_master": "JACCHQ000000000.1", "refseq_category": "reference genome", "taxid": "2751812", "species_taxid": "2751812", "organism_name": "Bradyrhizobium glycinis", "infraspecific_name": "strain=CNPSo 4016", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/14", "asm_name": "ASM1603165v1", "asm_submitter": "Empresa Brasileira de Pesquisa Agropecuaria", "gbrs_paired_asm": "GCA_016031655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/031/655/GCF_016031655.1_ASM1603165v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7794411", "genome_size_ungapped": "7794411", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "83", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016031655.1-RS_2024_09_27", "annotation_date": "2024-09-27", "total_gene_count": "7496", "protein_coding_gene_count": "7198", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-14", "dateModified": "2020-12-14", "datePublished": "2020-12-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium glycinis" ], "sample_taxid": [ "2751812" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Kununurra" ], "sample_host_location_id": [], "data_size": "2.164 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7794411", "Number of Sequences": "83", "Longest Sequences (bp)": "891019", "N50 (bp)": "202190", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "7454", "Average Protein Length": "291.8", "Coding Ratio (%)": "83.7", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium glycinis", "strain": "strain=CNPSo 4016", "accession": "GCA_016031655.1", "taxid": 2751812, "species_taxid": 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"validated": true, "ani": 90.567, "matched_fragments": 1942, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diversitatis", "strain": "strain=CNPSo 4019", "accession": "GCA_016031635.1", "taxid": 2755406, "species_taxid": 2755406, "relation_to_type": "type", "validated": true, "ani": 90.1153, "matched_fragments": 1863, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium vignae", "strain": "strain=LMG 28791", "accession": "GCA_004114425.1", "taxid": 1549949, "species_taxid": 1549949, "relation_to_type": "type", "validated": true, "ani": 89.8758, "matched_fragments": 1839, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangxiense", "strain": "strain=CCBAU 53363", "accession": "GCA_004114915.1", "taxid": 1325115, "species_taxid": 1325115, "relation_to_type": "type", "validated": true, "ani": 89.2713, "matched_fragments": 1854, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium huanghuaihaiense", "strain": "strain=CGMCC 1.10948", "accession": "GCA_007830635.1", "taxid": 990078, "species_taxid": 990078, "relation_to_type": "type", "validated": true, "ani": 89.0619, "matched_fragments": 1964, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium zhanjiangense", "strain": "strain=CCBAU 51778", "accession": "GCA_004114935.1", "taxid": 1325107, "species_taxid": 1325107, "relation_to_type": "type", "validated": true, "ani": 88.7983, "matched_fragments": 1954, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium sacchari", "strain": "strain=p9-20", "accession": "GCA_002068095.1", "taxid": 1399419, "species_taxid": 1399419, "relation_to_type": "type", "validated": true, "ani": 88.6545, "matched_fragments": 1936, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium daqingense", "strain": "strain=CCBAU 15774", "accession": "GCA_021044685.1", "taxid": 993502, "species_taxid": 993502, "relation_to_type": "type", "validated": true, "ani": 88.5712, "matched_fragments": 1902, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 88.5388, "matched_fragments": 1898, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium niftali", "strain": "strain=CNPSo 3448", "accession": "GCA_004571025.1", "taxid": 2560055, "species_taxid": 2560055, "relation_to_type": "type", "validated": true, "ani": 88.4099, "matched_fragments": 1979, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 88.0774, "matched_fragments": 1644, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 82.8111, "matched_fragments": 1355, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 82.7832, "matched_fragments": 1462, "total_fragments": 2561, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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