{ "type": "genome", "identifier": "GCF_016056375.1", "organism": "Hymenobacter negativus", "title": "Hymenobacter negativus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016056375.1", "bioproject": "PRJNA224116", "biosample": "SAMN17013085", "wgs_master": "JAEDAE000000000.1", "refseq_category": "reference genome", "taxid": "2795026", "species_taxid": "2795026", "organism_name": "Hymenobacter negativus", "infraspecific_name": "strain=BT442", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/15", "asm_name": "ASM1605637v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_016056375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/056/375/GCF_016056375.1_ASM1605637v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5143362", "genome_size_ungapped": "5143362", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016056375.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4279", "protein_coding_gene_count": "4215", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-15", "dateModified": "2020-12-15", "datePublished": "2020-12-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter negativus" ], "sample_taxid": [ "2795026" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.436 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5143362", "Number of Sequences": "19", "Longest Sequences (bp)": "1116453", "N50 (bp)": "436522", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "4210", "Average Protein Length": "359.0", "Coding Ratio (%)": "88.2", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter artigasi", "strain": "strain=1B", "accession": "GCA_012275535.1", "taxid": 2719616, "species_taxid": 2719616, "relation_to_type": "type", "validated": true, "ani": 87.5533, "matched_fragments": 1322, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rubidus", "strain": "strain=DG7B", "accession": "GCA_016734815.1", "taxid": 1441626, "species_taxid": 1441626, "relation_to_type": "type", "validated": true, "ani": 85.0374, "matched_fragments": 1198, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terricola", "strain": "strain=3F2", "accession": "GCA_017921975.2", "taxid": 2819236, "species_taxid": 2819236, "relation_to_type": "type", "validated": true, "ani": 84.898, "matched_fragments": 1279, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter ruricola", "strain": "strain=BT662", "accession": "GCA_015694525.1", "taxid": 2791023, "species_taxid": 2791023, "relation_to_type": "type", "validated": true, "ani": 84.7866, "matched_fragments": 1269, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018967845.1", "gtdb_species": "s__Hymenobacter sp018967845", "ani": 87.1237, "matched_fragments": 1239, "total_fragments": 1708, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016734815.1", "gtdb_species": "s__Hymenobacter rubidus", "ani": 85.0472, "matched_fragments": 1196, "total_fragments": 1708, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, 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