{
    "type": "genome",
    "identifier": "GCF_016065055.1",
    "organism": "Halosimplex litoreum",
    "title": "Halosimplex litoreum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016065055.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17013084",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1198301",
        "species_taxid": "1198301",
        "organism_name": "Halosimplex litoreum",
        "infraspecific_name": "strain=YGH94",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/15",
        "asm_name": "ASM1606505v1",
        "asm_submitter": "Jiangsu University",
        "gbrs_paired_asm": "GCA_016065055.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/065/055/GCF_016065055.1_ASM1606505v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4158049",
        "genome_size_ungapped": "4158049",
        "gc_percent": "68.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016065055.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "4125",
        "protein_coding_gene_count": "4043",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-15",
    "dateModified": "2020-12-15",
    "datePublished": "2020-12-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halosimplex litoreum"
        ],
        "sample_taxid": [
            "1198301"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hainan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.116 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4158049",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4158049",
        "N50 (bp)": "4158049",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.5",
        "Number of CDSs": "4082",
        "Average Protein Length": "295.9",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halosimplex litoreum",
                "strain": "strain=YGH94",
                "accession": "GCA_016065055.1",
                "taxid": 1198301,
                "species_taxid": 1198301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1386,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halosimplex carlsbadense",
                "strain": "strain=2-9-1",
                "accession": "GCA_000337455.1",
                "taxid": 171164,
                "species_taxid": 171164,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.8893,
                "matched_fragments": 1124,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halosimplex pelagicum",
                "strain": "strain=R2",
                "accession": "GCA_013415905.1",
                "taxid": 869886,
                "species_taxid": 869886,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.5309,
                "matched_fragments": 1088,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halosimplex rubrum",
                "strain": "strain=R27",
                "accession": "GCA_013415885.1",
                "taxid": 869889,
                "species_taxid": 869889,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2104,
                "matched_fragments": 1056,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halosimplex halophilum",
                "strain": "strain=TH32",
                "accession": "GCA_004698125.1",
                "taxid": 2559572,
                "species_taxid": 2559572,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.88,
                "matched_fragments": 1067,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016065055.1",
                "gtdb_species": "s__Halosimplex litoreum",
                "ani": 100.0,
                "matched_fragments": 1386,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halosimplex",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000337455.1",
                "gtdb_species": "s__Halosimplex carlsbadense",
                "ani": 89.9031,
                "matched_fragments": 1123,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halosimplex",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013415905.1",
                "gtdb_species": "s__Halosimplex pelagicum",
                "ani": 89.5309,
                "matched_fragments": 1088,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halosimplex",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013415885.1",
                "gtdb_species": "s__Halosimplex rubrum",
                "ani": 89.2203,
                "matched_fragments": 1056,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halosimplex",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004698125.1",
                "gtdb_species": "s__Halosimplex halophilum",
                "ani": 87.8939,
                "matched_fragments": 1066,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halosimplex",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 39.0,
        "optimum_tmp": 39.0,
        "optimum_ph": 7.25,
        "genome_size": 4694889.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.5,
        "aerobic_respiration": 0.5,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Halosimplex",
        "litoreum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}