{ "type": "genome", "identifier": "GCF_016093545.1", "organism": "Massilia rhizosphaerae", "title": "Massilia rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "college of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016093545.1", "bioproject": "PRJNA224116", "biosample": "SAMN16630897", "wgs_master": "JADKYX000000000.1", "refseq_category": "reference genome", "taxid": "2784389", "species_taxid": "2784389", "organism_name": "Massilia rhizosphaerae", "infraspecific_name": "strain=NEAU-GH312", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/16", "asm_name": "ASM1609354v1", "asm_submitter": "college of life science", "gbrs_paired_asm": "GCA_016093545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/093/545/GCF_016093545.1_ASM1609354v1", 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"sample_host_location": [ "China:Heilongjiang" ], "sample_host_location_id": [], "data_size": "1.913 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7001290", "Number of Sequences": "59", "Longest Sequences (bp)": "727414", "N50 (bp)": "243144", "Gap Ratio (%)": "0.000143", "GCcontent (%)": "66.2", "Number of CDSs": "5912", "Average Protein Length": "357.4", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "86", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia rhizosphaerae", "strain": "strain=NEAU-GH312", "accession": "GCA_016093545.1", "taxid": 2784389, "species_taxid": 2784389, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2305, "total_fragments": 2307, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Massilia putida", "strain": "strain=6NM-7", "accession": "GCA_001941825.1", "taxid": 1141883, "species_taxid": 1141883, "relation_to_type": "type", "validated": true, "ani": 90.7894, "matched_fragments": 1711, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia pinisoli", "strain": "strain=JCM 31316", "accession": "GCA_024753285.1", "taxid": 1772194, "species_taxid": 1772194, "relation_to_type": "type", "validated": true, "ani": 88.9265, "matched_fragments": 1691, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia norwichensis", "strain": "strain=LMG 28164", "accession": "GCA_024753245.1", "taxid": 1442366, "species_taxid": 1442366, "relation_to_type": "type", "validated": true, "ani": 83.8079, "matched_fragments": 1315, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia forsythiae", "strain": "strain=GN2-R2", "accession": "GCA_012849555.1", "taxid": 2728020, "species_taxid": 2728020, "relation_to_type": "type", "validated": true, "ani": 83.6106, "matched_fragments": 1365, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia solisilvae", "strain": "strain=JCM 31607", "accession": "GCA_024753215.1", "taxid": 1811225, "species_taxid": 1811225, "relation_to_type": "type", "validated": true, "ani": 81.8324, "matched_fragments": 1087, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agri", "strain": "strain=JCM 31661", "accession": "GCA_024753255.1", "taxid": 1886785, "species_taxid": 1886785, "relation_to_type": "type", "validated": true, "ani": 81.782, "matched_fragments": 1118, "total_fragments": 2307, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"gtdb_species": "s__Massilia phosphatilytica", "ani": 89.4389, "matched_fragments": 1789, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011682055.1", "gtdb_species": "s__Massilia sp011682055", "ani": 88.8881, "matched_fragments": 1692, "total_fragments": 2307, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.079, 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