{
    "type": "genome",
    "identifier": "GCF_016102465.1",
    "organism": "Bartonella apihabitans",
    "title": "Bartonella apihabitans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "China Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016102465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15470793",
        "wgs_master": "JACFON000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2750929",
        "species_taxid": "2750929",
        "organism_name": "Bartonella apihabitans",
        "infraspecific_name": "strain=W8097",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/16",
        "asm_name": "ASM1610246v1",
        "asm_submitter": "China Agricultural University",
        "gbrs_paired_asm": "GCA_016102465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/102/465/GCF_016102465.1_ASM1610246v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2644922",
        "genome_size_ungapped": "2644729",
        "gc_percent": "45.500000",
        "replicon_count": "0",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016102465.1-RS_2024_05_07",
        "annotation_date": "2024-05-07",
        "total_gene_count": "2277",
        "protein_coding_gene_count": "2202",
        "non_coding_gene_count": "45",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-16",
    "dateModified": "2020-12-16",
    "datePublished": "2020-12-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bartonella apihabitans"
        ],
        "sample_taxid": [
            "2750929"
        ],
        "sample_host_organism": [
            "Apis mellifera"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Jilin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.749 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2644922",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "1348552",
        "N50 (bp)": "1348552",
        "Gap Ratio (%)": "0.007297",
        "GCcontent (%)": "45.3",
        "Number of CDSs": "2226",
        "Average Protein Length": "320.5",
        "Coding Ratio (%)": "80.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Bartonella apis",
                "strain": "strain=PEB0122",
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                "taxid": 1686310,
                "species_taxid": 1686310,
                "relation_to_type": "type",
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                "total_fragments": 878,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudochrobactrum saccharolyticum",
                "strain": "strain=CCUG 33852",
                "accession": "GCA_008801715.1",
                "taxid": 354352,
                "species_taxid": 354352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudochrobactrum saccharolyticum",
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                "accession": "GCA_014203195.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3,
                "matched_fragments": 66,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudochrobactrum algeriensis",
                "strain": "",
                "accession": "GCA_907164595.1",
                "taxid": 2834768,
                "species_taxid": 2834768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1926,
                "matched_fragments": 63,
                "total_fragments": 878,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudochrobactrum algeriensis",
                "strain": "",
                "accession": "GCA_018436245.1",
                "taxid": 2834768,
                "species_taxid": 2834768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1668,
                "matched_fragments": 64,
                "total_fragments": 878,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenochrobactrum gallinarii",
                "strain": "strain=DSM 22336",
                "accession": "GCA_014205685.1",
                "taxid": 643673,
                "species_taxid": 643673,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0867,
                "matched_fragments": 64,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella pituitosa",
                "strain": "strain=CCUG 50899",
                "accession": "GCA_003049685.2",
                "taxid": 571256,
                "species_taxid": 571256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0691,
                "matched_fragments": 60,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella pituitosa",
                "strain": "strain=CCUG 50899",
                "accession": "GCA_008801705.1",
                "taxid": 571256,
                "species_taxid": 571256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0691,
                "matched_fragments": 60,
                "total_fragments": 878,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002007485.1",
                "gtdb_species": "s__Bartonella apis_A",
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                "matched_fragments": 831,
                "total_fragments": 878,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.35",
                "min_intra_species_ani": "97.25",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 12,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016100455.1",
                "gtdb_species": "s__Bartonella sp016100455",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016102285.1",
                "gtdb_species": "s__Bartonella sp016102285",
                "ani": 94.1393,
                "matched_fragments": 806,
                "total_fragments": 878,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella",
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            },
            {
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                "matched_fragments": 715,
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            },
            {
                "accession": "GCA_002005325.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Tokpelaia",
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                "mean_intra_species_ani": "N/A",
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            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.315,
        "cell_length": 0.071,
        "doubling_h": 0.627,
        "growth_tmp": 36.224,
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        "genome_size": 1912158.156,
        "gc_content": 38.327,
        "coding_genes": 1584.487,
        "rRNA16S_genes": 2.0,
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        "sporulation": 0.0,
        "motility": 0.583,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.687,
        "coccus_cell_shape": 0.062,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.25,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Bartonella",
        "apihabitans"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}