{ "type": "genome", "identifier": "GCF_016103025.1", "organism": "Cronobacter sakazakii", "title": "Cronobacter sakazakii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016103025.1", "bioproject": "PRJNA224116", "biosample": "SAMN13450457", "wgs_master": "JAEDZW000000000.1", "refseq_category": "na", "taxid": "28141", "species_taxid": "28141", "organism_name": "Cronobacter sakazakii", "infraspecific_name": "strain=FDAARGOS_927", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/16", "asm_name": "ASM1610302v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_016103025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/103/025/GCF_016103025.1_ASM1610302v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4688895", "genome_size_ungapped": "4688895", "gc_percent": "56.500000", "replicon_count": "3", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016103025.1-RS_2024_08_30", "annotation_date": "2024-08-30", "total_gene_count": "4600", "protein_coding_gene_count": "4347", "non_coding_gene_count": "119", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-16", "dateModified": "2020-12-16", "datePublished": "2020-12-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Cronobacter sakazakii" ], "sample_taxid": [ "28141" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Not applicable" ], "sample_host_location_id": [], "data_size": "1.318 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4688895", "Number of Sequences": "6", "Longest Sequences (bp)": "2145659", "N50 (bp)": "1694105", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.6", "Number of CDSs": "4552", "Average Protein Length": "299.6", "Coding Ratio (%)": "87.3", "Number of rRNAs": "20", "Number of tRNAs": "80", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cronobacter sakazakii", "strain": "strain=FDAARGOS_927", "accession": "GCA_016103025.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1556, "total_fragments": 1559, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_000982825.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 99.9958, "matched_fragments": 1540, "total_fragments": 1559, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=NBRC 102416", "accession": "GCA_000684935.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 99.9552, "matched_fragments": 1455, "total_fragments": 1559, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_001971035.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 99.7628, "matched_fragments": 1314, "total_fragments": 1559, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_001277215.2", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 94.9903, "matched_fragments": 1330, "total_fragments": 1559, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_000409305.1", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 94.933, "matched_fragments": 1303, "total_fragments": 1559, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.6002, "matched_fragments": 832, "total_fragments": 1559, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 81.5297, "matched_fragments": 839, "total_fragments": 1559, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.0156, "matched_fragments": 826, "total_fragments": 1559, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 80.771, "matched_fragments": 829, "total_fragments": 1559, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 0.0, 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