{ "type": "genome", "identifier": "GCF_016107545.1", "organism": "Psychrobacter namhaensis", "title": "Psychrobacter namhaensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INRAE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016107545.1", "bioproject": "PRJNA224116", "biosample": "SAMN14601839", "wgs_master": "JABASS000000000.1", "refseq_category": "na", "taxid": "292734", "species_taxid": "292734", "organism_name": "Psychrobacter namhaensis", "infraspecific_name": "strain=DSM 16330", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/17", "asm_name": "ASM1610754v1", "asm_submitter": "INRAE", "gbrs_paired_asm": "GCA_016107545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/107/545/GCF_016107545.1_ASM1610754v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2900373", "genome_size_ungapped": "2900373", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016107545.1-RS_2024_11_28", "annotation_date": "2024-11-28", "total_gene_count": "2457", "protein_coding_gene_count": "2380", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-17", "dateModified": "2020-12-17", "datePublished": "2020-12-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Psychrobacter namhaensis" ], "sample_taxid": [ "292734" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.829 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2900373", "Number of Sequences": "45", "Longest Sequences (bp)": "453204", "N50 (bp)": "180725", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.0", "Number of CDSs": "2423", "Average Protein Length": "330.4", "Coding Ratio (%)": "82.8", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Psychrobacter namhaensis", "strain": "strain=DSM 16330", "accession": "GCA_016107545.1", "taxid": 292734, "species_taxid": 292734, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 945, "total_fragments": 946, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Psychrobacter aquaticus", "strain": "strain=CMS 56", "accession": "GCA_000471625.1", "taxid": 248452, "species_taxid": 248452, "relation_to_type": "type", "validated": true, "ani": 83.3562, "matched_fragments": 737, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter aquimaris", "strain": "strain=DSM 16329", "accession": "GCA_016107525.1", "taxid": 292733, "species_taxid": 292733, "relation_to_type": "type", "validated": true, "ani": 82.3109, "matched_fragments": 726, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter immobilis", "strain": "strain=DSM 7229", "accession": "GCA_003148585.1", "taxid": 498, "species_taxid": 498, "relation_to_type": "suspected-type", "validated": true, "ani": 82.2019, "matched_fragments": 715, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter cibarius", "strain": "strain=DSM 16327", "accession": "GCA_016107535.1", "taxid": 282669, "species_taxid": 282669, "relation_to_type": "type", "validated": true, "ani": 81.9489, "matched_fragments": 688, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter pacificensis", "strain": "strain=DSM 23406", "accession": "GCA_900101915.1", "taxid": 112002, "species_taxid": 112002, "relation_to_type": "type", "validated": true, "ani": 81.4811, "matched_fragments": 629, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter glaciei", "strain": "strain=KCTC 42280", "accession": "GCA_014652895.1", "taxid": 619771, "species_taxid": 619771, "relation_to_type": "type", "validated": true, "ani": 81.3518, "matched_fragments": 672, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter fozii", "strain": "strain=CECT 5889", "accession": "GCA_003217155.1", "taxid": 198480, "species_taxid": 198480, "relation_to_type": "type", "validated": true, "ani": 81.2416, "matched_fragments": 662, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter celer", "strain": "strain=DSM 23510", "accession": "GCA_016107555.1", "taxid": 306572, "species_taxid": 306572, "relation_to_type": "type", "validated": true, "ani": 80.8872, "matched_fragments": 584, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter faecalis", "strain": "strain=DSM 14664", "accession": "GCA_016107575.1", "taxid": 180588, "species_taxid": 180588, "relation_to_type": "type", "validated": true, "ani": 80.586, "matched_fragments": 580, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter communis", "strain": "strain=Sa4CVA2", "accession": "GCA_014836505.1", "taxid": 2762238, "species_taxid": 2762238, "relation_to_type": "type", "validated": true, "ani": 80.55, "matched_fragments": 598, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter arcticus", "strain": "strain=273-4", "accession": "GCA_000012305.1", "taxid": 334543, "species_taxid": 334543, "relation_to_type": "type", "validated": true, "ani": 80.4574, "matched_fragments": 541, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter cryohalolentis", "strain": "strain=K5", "accession": "GCA_000013905.1", "taxid": 330922, "species_taxid": 330922, "relation_to_type": "type", "validated": true, "ani": 80.4524, "matched_fragments": 581, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter halodurans", "strain": "strain=F2608", "accession": "GCA_017498075.1", "taxid": 2818439, "species_taxid": 2818439, "relation_to_type": "type", "validated": true, "ani": 80.3108, "matched_fragments": 568, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter coccoides", "strain": "strain=F1192", "accession": "GCA_017498085.1", "taxid": 2818440, "species_taxid": 2818440, "relation_to_type": "type", "validated": true, "ani": 78.734, "matched_fragments": 398, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016107545.1", "gtdb_species": "s__Psychrobacter namhaensis", "ani": 100.0, "matched_fragments": 945, "total_fragments": 946, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_904846715.1", "gtdb_species": "s__Psychrobacter vallis", "ani": 83.4139, "matched_fragments": 741, "total_fragments": 946, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000471625.1", "gtdb_species": "s__Psychrobacter aquaticus", "ani": 83.3653, "matched_fragments": 736, "total_fragments": 946, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_904846225.1", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Psychrobacter", "namhaensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }