{ "type": "genome", "identifier": "GCF_016107685.1", "organism": "Brevibacterium yomogidense", "title": "Brevibacterium yomogidense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INRAE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016107685.1", "bioproject": "PRJNA224116", "biosample": "SAMN14601833", "wgs_master": "JABASY000000000.1", "refseq_category": "reference genome", "taxid": "946573", "species_taxid": "946573", "organism_name": "Brevibacterium yomogidense", "infraspecific_name": "strain=DSM 24850", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/17", "asm_name": "ASM1610768v1", "asm_submitter": "INRAE", "gbrs_paired_asm": "GCA_016107685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/107/685/GCF_016107685.1_ASM1610768v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3708510", "genome_size_ungapped": "3708510", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016107685.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3254", "protein_coding_gene_count": "3184", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-17", "dateModified": "2020-12-17", "datePublished": "2020-12-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium yomogidense" ], "sample_taxid": [ "946573" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.009 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3708510", "Number of Sequences": "18", "Longest Sequences (bp)": "1074699", "N50 (bp)": "915264", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.1", "Number of CDSs": "3243", "Average Protein Length": "343.8", "Coding Ratio (%)": "90.2", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacterium yomogidense", "strain": "strain=DSM 24850", "accession": "GCA_016107685.1", "taxid": 946573, "species_taxid": 946573, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1228, "total_fragments": 1228, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevibacterium senegalense", "strain": "strain=JC43", "accession": "GCA_000285835.2", "taxid": 1033736, "species_taxid": 1033736, "relation_to_type": "type", "validated": true, "ani": 82.5263, "matched_fragments": 756, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium jeotgali", "strain": "strain=SJ5-8", "accession": "GCA_900169175.1", "taxid": 1262550, "species_taxid": 1262550, "relation_to_type": "type", "validated": true, "ani": 82.1333, "matched_fragments": 776, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium jeotgali", "strain": "strain=DSM 29217", "accession": "GCA_007828155.1", "taxid": 1262550, "species_taxid": 1262550, "relation_to_type": "type", "validated": true, "ani": 82.0763, "matched_fragments": 766, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium album", "strain": "strain=DSM 18261", "accession": "GCA_000426445.1", "taxid": 417948, "species_taxid": 417948, "relation_to_type": "type", "validated": true, "ani": 79.2179, "matched_fragments": 595, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium rongguiense", "strain": "strain=5221", "accession": "GCA_009857845.1", "taxid": 2695267, "species_taxid": 2695267, "relation_to_type": "type", "validated": true, "ani": 78.7416, "matched_fragments": 360, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium ihuae", "strain": "strain=CV3", "accession": "GCA_900184225.1", "taxid": 1631743, "species_taxid": 1631743, "relation_to_type": "type", "validated": true, "ani": 78.7031, "matched_fragments": 407, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium daeguense", "strain": "strain=DSM 27938", "accession": "GCA_021729135.1", "taxid": 909936, "species_taxid": 909936, "relation_to_type": "type", "validated": true, "ani": 77.7397, "matched_fragments": 366, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium antiquum", "strain": "strain=DSM 21545", "accession": "GCA_016107655.1", "taxid": 234835, "species_taxid": 234835, "relation_to_type": "type", "validated": true, "ani": 77.1826, "matched_fragments": 237, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium zhoupengii", "strain": "strain=HY170", "accession": "GCA_021117425.1", "taxid": 2898795, "species_taxid": 2898795, "relation_to_type": "type", "validated": true, "ani": 76.939, "matched_fragments": 218, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus cauae", "strain": "strain=MKL-02", "accession": "GCA_009707125.1", "taxid": 2663847, "species_taxid": 2663847, "relation_to_type": "type", "validated": true, "ani": 76.4317, "matched_fragments": 125, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 76.3839, "matched_fragments": 158, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces aquilus", "strain": "strain=GGCR-6", "accession": "GCA_003955715.1", "taxid": 2548456, "species_taxid": 2548456, "relation_to_type": "type", "validated": true, "ani": 75.721, "matched_fragments": 189, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016107685.1", "gtdb_species": "s__Brevibacterium 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