{ "type": "genome", "identifier": "GCF_016117655.1", "organism": "Treponema peruense", "title": "Treponema peruense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "VIB-KU LEUVEN", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016117655.1", "bioproject": "PRJNA224116", "biosample": "SAMN16746786", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2787628", "species_taxid": "2787628", "organism_name": "Treponema peruense", "infraspecific_name": "strain=RCC2812", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/18", "asm_name": "ASM1611765v1", "asm_submitter": "VIB-KU LEUVEN", "gbrs_paired_asm": "GCA_016117655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/117/655/GCF_016117655.1_ASM1611765v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2738066", "genome_size_ungapped": "2738066", "gc_percent": "41.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016117655.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2523", "protein_coding_gene_count": "2437", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-18", "dateModified": "2020-12-18", "datePublished": "2020-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Treponema peruense" ], "sample_taxid": [ "2787628" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Peru: Remoyacu" ], "sample_host_location_id": [], "data_size": "0.766 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2738066", "Number of Sequences": "1", "Longest Sequences (bp)": "2738066", "N50 (bp)": "2738066", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.2", "Number of CDSs": "2434", "Average Protein Length": "341.2", "Coding Ratio (%)": "91.0", "Number of rRNAs": "14", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Treponema peruense", "strain": "strain=RCC2812", "accession": "GCA_016117655.1", "taxid": 2787628, "species_taxid": 2787628, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 911, "total_fragments": 912, "ani_threshold": 95, "status": 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