{ "type": "genome", "identifier": "GCF_016123485.1", "organism": "Halocynthiibacter styelae", "title": "Halocynthiibacter styelae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016123485.1", "bioproject": "PRJNA224116", "biosample": "SAMN15588763", "wgs_master": "JADCKQ000000000.1", "refseq_category": "reference genome", "taxid": "2761955", "species_taxid": "2761955", "organism_name": "Halocynthiibacter styelae", "infraspecific_name": "strain=MYP1-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/18", "asm_name": "ASM1612348v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_016123485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/123/485/GCF_016123485.1_ASM1612348v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3724544", "genome_size_ungapped": "3724544", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016123485.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3661", "protein_coding_gene_count": "3579", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-18", "dateModified": "2020-12-18", "datePublished": "2020-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Halocynthiibacter styelae" ], "sample_taxid": [ "2761955" ], "sample_host_organism": [ "Styela clava" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: South Sea" ], "sample_host_location_id": [], "data_size": "1.053 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3724544", "Number of Sequences": "40", "Longest Sequences (bp)": "469306", "N50 (bp)": "279660", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.0", "Number of CDSs": "3633", "Average Protein Length": "304.8", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cochlodiniinecator piscidefendens", "strain": "strain=M26A2M", "accession": "GCA_011326755.1", "taxid": 2715756, "species_taxid": 2715756, "relation_to_type": "type", "validated": true, "ani": 77.4943, "matched_fragments": 161, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens niveibacter", "strain": "strain=MCCC 1A06712", "accession": "GCA_002150005.2", "taxid": 1930667, "species_taxid": 1930667, "relation_to_type": "type", "validated": true, "ani": 77.2976, "matched_fragments": 127, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognatishimia activa", "strain": "strain=CECT 5113", "accession": "GCA_001458335.1", "taxid": 1715691, "species_taxid": 1715691, "relation_to_type": "type", "validated": true, "ani": 77.1974, "matched_fragments": 146, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mediterraneus", "strain": "strain=DSM 16398", "accession": "GCA_900156595.1", "taxid": 340021, "species_taxid": 340021, "relation_to_type": "type", "validated": true, "ani": 77.1305, "matched_fragments": 217, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia marina", "strain": "strain=DSM 26895", "accession": "GCA_900112745.1", "taxid": 321267, "species_taxid": 321267, "relation_to_type": "type", "validated": true, "ani": 77.0124, "matched_fragments": 208, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius autumnalis", "strain": "strain=CECT 5118", "accession": "GCA_001458255.1", "taxid": 2072972, "species_taxid": 2072972, "relation_to_type": "type", "validated": true, "ani": 77.005, "matched_fragments": 243, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia marina", "strain": "strain=CECT 7688", "accession": "GCA_001458175.1", "taxid": 321267, "species_taxid": 321267, "relation_to_type": "type", "validated": true, "ani": 76.9969, "matched_fragments": 208, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia haliotis", "strain": "strain=DSM 28453", "accession": "GCA_900114415.1", "taxid": 1280847, "species_taxid": 1280847, "relation_to_type": "type", "validated": true, "ani": 76.9932, "matched_fragments": 171, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter inhibens", "strain": "strain=DSM 16374", "accession": "GCA_000473105.1", "taxid": 221822, "species_taxid": 221822, "relation_to_type": "type", "validated": true, "ani": 76.9356, "matched_fragments": 188, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter multivorans", "strain": "strain=CECT 7557", "accession": "GCA_001458415.1", "taxid": 928856, "species_taxid": 928856, "relation_to_type": "type", "validated": true, "ani": 76.8039, "matched_fragments": 235, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter multivorans", "strain": "strain=DSM 26470", "accession": "GCA_900112515.1", "taxid": 928856, "species_taxid": 928856, "relation_to_type": "type", "validated": true, "ani": 76.7705, "matched_fragments": 233, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius crassostreae", "strain": "strain=CV919-312", "accession": "GCA_001307765.1", "taxid": 154981, "species_taxid": 154981, "relation_to_type": "type", "validated": true, "ani": 76.6834, "matched_fragments": 198, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 76.6565, "matched_fragments": 147, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Profundibacter amoris", "strain": "strain=BAR1", "accession": "GCA_003544895.1", "taxid": 2171755, "species_taxid": 2171755, "relation_to_type": "type", "validated": true, "ani": 76.641, "matched_fragments": 211, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorivita pollutaquae", "strain": "strain=FSX-11", "accession": "GCA_003205515.1", "taxid": 2200892, "species_taxid": 2200892, "relation_to_type": "type", "validated": true, "ani": 76.6334, "matched_fragments": 116, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiruegeria mediterranea", "strain": "strain=CECT 7615", "accession": "GCA_900302455.1", "taxid": 1280832, "species_taxid": 1280832, "relation_to_type": "type", "validated": true, "ani": 76.6235, "matched_fragments": 174, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter gallaeciensis", "strain": "strain=DSM 26640", "accession": "GCA_000819625.1", "taxid": 60890, "species_taxid": 60890, "relation_to_type": "type", "validated": true, "ani": 76.5949, "matched_fragments": 191, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter gallaeciensis", "strain": "strain=DSM 26640", "accession": "GCA_000511385.1", "taxid": 60890, "species_taxid": 60890, "relation_to_type": "type", "validated": true, "ani": 76.5869, "matched_fragments": 194, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 76.546, "matched_fragments": 95, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoprimorskyibacter insulae", "strain": "strain=CECT 8871", "accession": "GCA_900302505.1", "taxid": 1695997, "species_taxid": 1695997, "relation_to_type": "type", "validated": true, "ani": 76.4902, "matched_fragments": 170, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 76.4503, "matched_fragments": 189, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius aestuarii", "strain": "strain=KCTC 22174", "accession": "GCA_019966515.1", "taxid": 475083, "species_taxid": 475083, "relation_to_type": "type", "validated": true, "ani": 76.4337, "matched_fragments": 138, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter roseus", "strain": "strain=K6", "accession": "GCA_009811795.1", "taxid": 2601869, "species_taxid": 2601869, "relation_to_type": "type", "validated": true, "ani": 76.4123, "matched_fragments": 91, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 76.4076, "matched_fragments": 185, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia isoporae", "strain": "strain=DSM 26433", "accession": "GCA_004346865.1", "taxid": 647720, "species_taxid": 647720, "relation_to_type": "type", "validated": true, "ani": 76.3418, "matched_fragments": 125, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dinoroseobacter shibae", "strain": "strain=DFL 12", "accession": "GCA_000018145.1", "taxid": 215813, "species_taxid": 215813, "relation_to_type": "type", "validated": true, "ani": 76.3337, "matched_fragments": 98, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiruegeria haliotis", "strain": "strain=DSM 29328", "accession": "GCA_003003255.1", "taxid": 1280846, "species_taxid": 1280846, "relation_to_type": "type", "validated": true, "ani": 76.1646, "matched_fragments": 79, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius aquimarinus", "strain": "strain=KMM 8518", "accession": "GCA_018219815.1", "taxid": 2785917, "species_taxid": 2785917, "relation_to_type": "type", "validated": true, "ani": 76.0832, "matched_fragments": 147, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter tardus", "strain": "strain=CYK-10", "accession": "GCA_009925085.1", "taxid": 2699202, "species_taxid": 2699202, "relation_to_type": "type", "validated": true, "ani": 76.0144, "matched_fragments": 76, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=CGMCC 1.3455", "accession": "GCA_900100725.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 75.8043, "matched_fragments": 101, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=DSM 26894", "accession": "GCA_900116195.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 75.7905, "matched_fragments": 100, "total_fragments": 1221, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016123485.1", "gtdb_species": "s__Halocynthiibacter sp016123485", "ani": 100.0, "matched_fragments": 1221, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Halocynthiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003031585.1", "gtdb_species": "s__Halocynthiibacter sp003031585", "ani": 94.306, "matched_fragments": 1047, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Halocynthiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000812685.1", "gtdb_species": "s__Halocynthiibacter namhaensis", "ani": 80.426, "matched_fragments": 556, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Halocynthiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011326755.1", "gtdb_species": "s__Halocynthiibacter sp011326755", "ani": 77.4943, "matched_fragments": 161, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Halocynthiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001458255.1", "gtdb_species": "s__Thalassobius autumnalis", "ani": 77.0029, "matched_fragments": 244, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thalassobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001458175.1", "gtdb_species": "s__Shimia marina", "ani": 76.9966, "matched_fragments": 209, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Shimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900114415.1", "gtdb_species": "s__Shimia haliotis", "ani": 76.9931, "matched_fragments": 171, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Shimia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001294455.1", "gtdb_species": "s__Pseudophaeobacter sp001294455", "ani": 76.9665, "matched_fragments": 200, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudophaeobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001458415.1", "gtdb_species": "s__Epibacterium multivorans", "ani": 76.8039, "matched_fragments": 235, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Epibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009496005.1", "gtdb_species": "s__Epibacterium litoralis", "ani": 76.7835, "matched_fragments": 182, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Epibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003544895.1", "gtdb_species": "s__Profundibacter amoris", "ani": 76.6533, "matched_fragments": 211, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Profundibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017743885.1", "gtdb_species": "s__Sulfitobacter sp001635605", "ani": 76.5668, "matched_fragments": 138, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.54", "min_intra_species_ani": "95.97", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900302505.1", "gtdb_species": "s__Pseudoprimorskyibacter insulae", "ani": 76.4902, "matched_fragments": 170, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudoprimorskyibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009857745.1", "gtdb_species": "s__Thalassobius mangrovi", "ani": 76.4216, "matched_fragments": 185, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thalassobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016888515.1", "gtdb_species": "s__Shimia_A biformata", "ani": 76.3858, "matched_fragments": 163, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Shimia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003003255.1", "gtdb_species": "s__Tropicimonas haliotis", "ani": 76.1646, "matched_fragments": 79, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tropicimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000473225.1", "gtdb_species": "s__Sedimentitalea nanhaiensis", "ani": 76.114, "matched_fragments": 133, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sedimentitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003217735.2", "gtdb_species": "s__Marinibacterium sp003217735", "ani": 76.0991, "matched_fragments": 129, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Marinibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.75", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018500075.1", "gtdb_species": "s__Lentibacter sp018500075", "ani": 76.0589, "matched_fragments": 96, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Lentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013328815.1", "gtdb_species": "s__UBA1943 sp013328815", "ani": 75.8879, "matched_fragments": 108, "total_fragments": 1221, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__UBA1943", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.27", "min_intra_species_ani": "97.27", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 25.0, "optimum_tmp": 21.0, "optimum_ph": null, "genome_size": 4005188.5, "gc_content": 53.152, "coding_genes": 3934.0, "rRNA16S_genes": 3.0, "tRNA_genes": 45.0, "gram_stain": 0.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halocynthiibacter", "styelae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }