{ "type": "genome", "identifier": "GCF_016127415.1", "organism": "Delftia acidovorans", "title": "Delftia acidovorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016127415.1", "bioproject": "PRJNA224116", "biosample": "SAMN16357166", "wgs_master": "na", "refseq_category": "na", "taxid": "80866", "species_taxid": "80866", "organism_name": "Delftia acidovorans", "infraspecific_name": "strain=FDAARGOS_997", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/20", "asm_name": "ASM1612741v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_016127415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/127/415/GCF_016127415.1_ASM1612741v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6796677", "genome_size_ungapped": "6796677", "gc_percent": "66.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-18", "total_gene_count": "6186", "protein_coding_gene_count": "6057", "non_coding_gene_count": "97", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-20", "dateModified": "2020-12-20", "datePublished": "2020-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Delftia acidovorans" ], "sample_taxid": [ "80866" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Braunschweig" ], "sample_host_location_id": [], "data_size": "1.845 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6796677", "Number of Sequences": "1", "Longest Sequences (bp)": "6796677", "N50 (bp)": "6796677", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "6101", "Average Protein Length": "333.5", "Coding Ratio (%)": "89.8", "Number of rRNAs": "15", "Number of tRNAs": "84", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Delftia acidovorans", "strain": "strain=FDAARGOS_997", "accession": "GCA_016127415.1", "taxid": 80866, "species_taxid": 80866, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"below_threshold" }, { "organism_name": "Comamonas testosteroni", "strain": "strain=ATCC 11996", "accession": "GCA_000241525.2", "taxid": 285, "species_taxid": 285, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1722, "matched_fragments": 1009, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_000964545.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 82.1283, "matched_fragments": 1015, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001517325.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 82.09, "matched_fragments": 1015, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas 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"GCA_019186805.1", "taxid": 2796366, "species_taxid": 2796366, "relation_to_type": "type", "validated": true, "ani": 81.1523, "matched_fragments": 880, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter ruginosibacter", "strain": "strain=DSM 27467", "accession": "GCA_014395975.1", "taxid": 1715720, "species_taxid": 1715720, "relation_to_type": "type", "validated": true, "ani": 80.8598, "matched_fragments": 841, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter caeni", "strain": "strain=NR2-3-3-1", "accession": "GCA_015354245.1", "taxid": 2784387, "species_taxid": 2784387, "relation_to_type": "type", "validated": true, "ani": 80.6701, "matched_fragments": 827, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax aquiterrae", "strain": "strain=KCTC 23314", "accession": "GCA_014652235.1", "taxid": 747304, 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