{ "type": "genome", "identifier": "GCF_016127935.1", "organism": "Staphylococcus pettenkoferi", "title": "Staphylococcus pettenkoferi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016127935.1", "bioproject": "PRJNA224116", "biosample": "SAMN16357240", "wgs_master": "na", "refseq_category": "na", "taxid": "170573", "species_taxid": "170573", "organism_name": "Staphylococcus pettenkoferi", "infraspecific_name": "strain=FDAARGOS_1071", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/20", "asm_name": "ASM1612793v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_016127935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/127/935/GCF_016127935.1_ASM1612793v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2493628", "genome_size_ungapped": "2493628", "gc_percent": "39.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-08", "total_gene_count": "2397", "protein_coding_gene_count": "2281", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-20", "dateModified": "2020-12-20", "datePublished": "2020-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Staphylococcus pettenkoferi" ], "sample_taxid": [ "170573" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Braunschweig" ], "sample_host_location_id": [], "data_size": "0.705 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2493628", "Number of Sequences": "2", "Longest Sequences (bp)": "2449395", "N50 (bp)": "2449395", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.0", "Number of CDSs": "2363", "Average Protein Length": "290.6", "Coding Ratio (%)": "82.6", "Number of rRNAs": "19", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Staphylococcus pettenkoferi", "strain": "strain=FDAARGOS_1071", "accession": "GCA_016127935.1", "taxid": 170573, "species_taxid": 170573, "relation_to_type": "type", 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"status": "below_threshold" }, { "organism_name": "Staphylococcus gallinarum", "strain": "strain=NCTC 12195", "accession": "GCA_003968815.1", "taxid": 1293, "species_taxid": 1293, "relation_to_type": "type", "validated": true, "ani": 78.7422, "matched_fragments": 168, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus petrasii", "strain": "strain=CCUG 62727", "accession": "GCA_002902565.1", "taxid": 1276936, "species_taxid": 1276936, "relation_to_type": "type", "validated": true, "ani": 78.6427, "matched_fragments": 185, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus caeli", "strain": "strain=82B", "accession": "GCA_900097965.1", "taxid": 2201815, "species_taxid": 2201815, "relation_to_type": "type", "validated": true, "ani": 78.5011, "matched_fragments": 182, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus succinus subsp. succinus", "strain": "strain=DSM 14617", "accession": "GCA_001006765.1", "taxid": 224030, "species_taxid": 61015, "relation_to_type": "type", "validated": true, "ani": 78.4787, "matched_fragments": 174, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus intermedius", "strain": "strain=NCTC 11048", "accession": "GCA_002902385.1", "taxid": 1285, "species_taxid": 1285, "relation_to_type": "type", "validated": true, "ani": 78.0648, "matched_fragments": 135, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus pasteuri", "strain": "strain=DSM 10656", "accession": "GCA_003970495.1", "taxid": 45972, "species_taxid": 45972, "relation_to_type": "type", "validated": true, "ani": 77.9202, "matched_fragments": 183, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus intermedius", "strain": 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