{
    "type": "genome",
    "identifier": "GCF_016128075.1",
    "organism": "Corynebacterium bovis",
    "title": "Corynebacterium bovis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US Food and Drug Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016128075.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16357221",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "36808",
        "species_taxid": "36808",
        "organism_name": "Corynebacterium bovis",
        "infraspecific_name": "strain=FDAARGOS_1052",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/20",
        "asm_name": "ASM1612807v1",
        "asm_submitter": "US Food and Drug Administration",
        "gbrs_paired_asm": "GCA_016128075.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/128/075/GCF_016128075.1_ASM1612807v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2652195",
        "genome_size_ungapped": "2652195",
        "gc_percent": "73.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-18",
        "total_gene_count": "2224",
        "protein_coding_gene_count": "2093",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-20",
    "dateModified": "2020-12-20",
    "datePublished": "2020-12-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium bovis"
        ],
        "sample_taxid": [
            "36808"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown",
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Braunschweig"
        ],
        "sample_host_location_id": [],
        "data_size": "0.695 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.37,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2652195",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2600540",
        "N50 (bp)": "2600540",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.9",
        "Number of CDSs": "2228",
        "Average Protein Length": "342.6",
        "Coding Ratio (%)": "86.3",
        "Number of rRNAs": "9",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Corynebacterium bovis",
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                "accession": "GCA_016128075.1",
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                "species_taxid": 36808,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 882,
                "total_fragments": 883,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Corynebacterium bovis",
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                "accession": "GCA_014191555.1",
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                "species_taxid": 36808,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
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            {
                "organism_name": "Corynebacterium bovis",
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                "species_taxid": 36808,
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                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium nuruki",
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                "species_taxid": 1032851,
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                "total_fragments": 883,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium nuruki",
                "strain": "strain=S6-4",
                "accession": "GCA_000213935.2",
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                "relation_to_type": "type",
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                "ani": 79.6545,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium variabile",
                "strain": "strain=NBRC 15286",
                "accession": "GCA_006539825.1",
                "taxid": 1727,
                "species_taxid": 1727,
                "relation_to_type": "type",
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                "ani": 79.0384,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium frankenforstense",
                "strain": "strain=ST18",
                "accession": "GCA_001941485.1",
                "taxid": 1230998,
                "species_taxid": 1230998,
                "relation_to_type": "type",
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                "matched_fragments": 328,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium phoceense",
                "strain": "strain=MC1",
                "accession": "GCA_900092335.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000183325.1",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCA_019120175.1",
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                "mean_intra_species_ani": "N/A",
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}