{ "type": "genome", "identifier": "GCF_016132545.1", "organism": "Spongiibacter nanhainus", "title": "Spongiibacter nanhainus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IOCAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016132545.1", "bioproject": "PRJNA224116", "biosample": "SAMN16992955", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2794344", "species_taxid": "2794344", "organism_name": "Spongiibacter nanhainus", "infraspecific_name": "strain=csc3.9", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/21", "asm_name": "ASM1613254v1", "asm_submitter": "IOCAS", "gbrs_paired_asm": "GCA_016132545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/132/545/GCF_016132545.1_ASM1613254v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4078570", "genome_size_ungapped": "4078570", "gc_percent": "56.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016132545.1-RS_2024_03_23", "annotation_date": "2024-03-23", "total_gene_count": "3686", "protein_coding_gene_count": "3622", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-21", "dateModified": "2020-12-21", "datePublished": "2020-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Spongiibacter nanhainus" ], "sample_taxid": [ "2794344" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: South China Sea" ], 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"status": "conclusive" }, { "organism_name": "Spongiibacter tropicus", "strain": "strain=DSM 19543", "accession": "GCA_000420325.1", "taxid": 454602, "species_taxid": 454602, "relation_to_type": "type", "validated": true, "ani": 79.0382, "matched_fragments": 264, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spongiibacter taiwanensis", "strain": "strain=SPT1", "accession": "GCA_023702635.1", "taxid": 1748242, "species_taxid": 1748242, "relation_to_type": "type", "validated": true, "ani": 77.9407, "matched_fragments": 285, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spongiibacter thalassae", "strain": "strain=KMU-166", "accession": "GCA_012272835.1", "taxid": 2721624, "species_taxid": 2721624, "relation_to_type": "type", "validated": true, "ani": 77.8432, "matched_fragments": 253, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spongiibacter pelagi", "strain": "strain=KMU-158", "accession": "GCA_014705705.1", "taxid": 2760804, "species_taxid": 2760804, "relation_to_type": "type", "validated": true, "ani": 77.7309, "matched_fragments": 191, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorivivens lipolytica", "strain": "strain=CECT 8654", "accession": "GCA_014191715.1", "taxid": 1524264, "species_taxid": 1524264, "relation_to_type": "type", "validated": true, "ani": 77.2004, "matched_fragments": 142, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halioglobus japonicus", "strain": "strain=NBRC 107739", "accession": "GCA_001983995.1", "taxid": 930805, "species_taxid": 930805, "relation_to_type": "type", "validated": true, "ani": 77.0757, "matched_fragments": 87, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parahaliea aestuarii", "strain": "strain=S2-26", "accession": "GCA_008064635.1", "taxid": 1852021, "species_taxid": 1852021, "relation_to_type": "type", "validated": true, "ani": 77.0188, "matched_fragments": 130, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundimaris", "strain": "strain=ST75FaO-1", "accession": "GCA_015265435.1", "taxid": 2735259, "species_taxid": 2735259, "relation_to_type": "type", "validated": true, "ani": 76.9828, "matched_fragments": 82, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parahaliea mediterranea", "strain": "strain=DSM 21924", "accession": "GCA_003402235.1", "taxid": 651086, "species_taxid": 651086, "relation_to_type": "type", "validated": true, "ani": 76.9629, "matched_fragments": 145, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seongchinamella unica", "strain": "strain=GH4-78", "accession": "GCA_004354085.1", "taxid": 2547392, 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"validated": true, "ani": 76.4885, "matched_fragments": 61, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium stanieri", "strain": "strain=DSM 7027", "accession": "GCA_900155945.1", "taxid": 49186, "species_taxid": 49186, "relation_to_type": "type", "validated": true, "ani": 76.2375, "matched_fragments": 52, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cuatrocienegasensis", "strain": "strain=CIP 109853", "accession": "GCA_900110925.1", "taxid": 543360, "species_taxid": 543360, "relation_to_type": "type", "validated": true, "ani": 76.2024, "matched_fragments": 61, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_900167195.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.1465, "matched_fragments": 75, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_001042925.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.1465, "matched_fragments": 75, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_012987025.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.1465, "matched_fragments": 75, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016132545.1", "gtdb_species": "s__CSC3-9 sp016132545", "ani": 100.0, "matched_fragments": 1359, "total_fragments": 1359, "gtdb_taxonomy": 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