{ "type": "genome", "identifier": "GCF_016236915.1", "organism": "Salegentibacter maritimus", "title": "Salegentibacter maritimus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University,Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016236915.1", "bioproject": "PRJNA224116", "biosample": "SAMN16996216", "wgs_master": "JAEHOK000000000.1", "refseq_category": "na", "taxid": "2794347", "species_taxid": "2794347", "organism_name": "Salegentibacter maritimus", "infraspecific_name": "strain=F63223", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/21", "asm_name": "ASM1623691v1", "asm_submitter": "Shandong University,Weihai", "gbrs_paired_asm": "GCA_016236915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/236/915/GCF_016236915.1_ASM1623691v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3886125", "genome_size_ungapped": "3885855", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "89", "contig_count": "89", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016236915.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3408", "protein_coding_gene_count": "3318", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-21", "dateModified": "2020-12-21", "datePublished": "2020-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Salegentibacter maritimus" ], "sample_taxid": [ "2794347" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.092 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3886125", "Number of Sequences": "89", "Longest Sequences (bp)": "347216", "N50 (bp)": "171571", "Gap Ratio (%)": "0.006948", "GCcontent (%)": "36.5", "Number of CDSs": "3281", "Average Protein Length": "341.9", "Coding Ratio (%)": "86.6", "Number of rRNAs": "6", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salegentibacter maritimus", "strain": "strain=F63223", "accession": "GCA_016236915.1", "taxid": 2794347, "species_taxid": 2794347, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1258, "total_fragments": 1263, "ani_threshold": 95, 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"organism_name": "Salegentibacter salarius", "strain": "strain=KCTC 12974", "accession": "GCA_002833385.1", "taxid": 435906, "species_taxid": 435906, "relation_to_type": "type", "validated": true, "ani": 83.1828, "matched_fragments": 788, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter mishustinae", "strain": "strain=DSM 23404", "accession": "GCA_002900095.1", "taxid": 270918, "species_taxid": 270918, "relation_to_type": "type", "validated": true, "ani": 83.164, "matched_fragments": 848, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter mishustinae", "strain": "strain=KCTC 12263", "accession": "GCA_001431365.1", "taxid": 270918, "species_taxid": 270918, "relation_to_type": "type", "validated": true, "ani": 83.1304, "matched_fragments": 834, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter 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"accession": "GCA_020164485.1", "taxid": 2873600, "species_taxid": 2873600, "relation_to_type": "type", "validated": true, "ani": 81.0411, "matched_fragments": 702, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alkalisoli", "strain": "strain=XS-5", "accession": "GCA_008000935.1", "taxid": 2602769, "species_taxid": 2602769, "relation_to_type": "type", "validated": true, "ani": 77.1731, "matched_fragments": 57, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloflavibacter putidus", "strain": "strain=PLHSN227", "accession": "GCA_006546625.1", "taxid": 2576776, "species_taxid": 2576776, "relation_to_type": "type", "validated": true, "ani": 76.6839, "matched_fragments": 118, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900168265.1", "gtdb_species": "s__Salegentibacter salarius", "ani": 83.2032, "matched_fragments": 808, "total_fragments": 1263, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002900095.1", "gtdb_species": "s__Salegentibacter mishustinae", "ani": 83.1339, "matched_fragments": 848, "total_fragments": 1263, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000745315.1", "gtdb_species": "s__Salegentibacter sp000745315", "ani": 81.389, "matched_fragments": 745, "total_fragments": 1263, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.263, "cell_length": 0.436, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 27.142, "optimum_ph": 7.787, "genome_size": 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