{ "type": "genome", "identifier": "GCF_016238445.1", "organism": "Staphylococcus canis", "title": "Staphylococcus canis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Edinburgh", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016238445.1", "bioproject": "PRJNA224116", "biosample": "SAMN14548534", "wgs_master": "JABANU000000000.1", "refseq_category": "reference genome", "taxid": "2724942", "species_taxid": "2724942", "organism_name": "Staphylococcus canis", "infraspecific_name": "strain=H16/1A", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/21", "asm_name": "ASM1623844v1", "asm_submitter": "University of Edinburgh", "gbrs_paired_asm": "GCA_016238445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/238/445/GCF_016238445.1_ASM1623844v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2229149", "genome_size_ungapped": "2229149", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "143", "contig_count": "143", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016238445.1-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "2251", "protein_coding_gene_count": "2118", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-21", "dateModified": "2020-12-21", "datePublished": "2020-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Staphylococcus canis" ], "sample_taxid": [ "2724942" ], "sample_host_organism": [ "Canis lupus familiaris" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": 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"organism_name": "Staphylococcus pseudintermedius", "strain": "strain=LMG 22219", "accession": "GCA_001792775.2", "taxid": 283734, "species_taxid": 283734, "relation_to_type": "type", "validated": true, "ani": 78.9317, "matched_fragments": 253, "total_fragments": 707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus agnetis", "strain": "strain=DSM 23656", "accession": "GCA_002901865.1", "taxid": 985762, "species_taxid": 985762, "relation_to_type": "type", "validated": true, "ani": 78.8541, "matched_fragments": 243, "total_fragments": 707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus delphini", "strain": "strain=NCTC 12225", "accession": "GCA_002902785.1", "taxid": 53344, "species_taxid": 53344, "relation_to_type": "type", "validated": true, "ani": 78.8357, "matched_fragments": 262, "total_fragments": 707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus schleiferi", "strain": "strain=NCTC12218", "accession": "GCA_900458895.2", "taxid": 1295, "species_taxid": 1295, "relation_to_type": "type", "validated": true, "ani": 78.8253, "matched_fragments": 262, "total_fragments": 707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus schleiferi subsp. schleiferi", "strain": "strain=NCTC 12218", "accession": "GCA_003968865.1", "taxid": 74707, "species_taxid": 1295, "relation_to_type": "type", "validated": true, "ani": 78.6993, "matched_fragments": 260, "total_fragments": 707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus schleiferi", "strain": "strain=ATCC 43808", "accession": "GCA_011137195.1", "taxid": 1295, "species_taxid": 1295, "relation_to_type": "type", "validated": true, "ani": 78.6833, "matched_fragments": 256, "total_fragments": 707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Staphylococcus coagulans", "strain": "strain=DSM 6628", "accession": 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