{ "type": "genome", "identifier": "GCF_016307205.1", "organism": "Pontibaca salina", "title": "Pontibaca salina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016307205.1", "bioproject": "PRJNA224116", "biosample": "SAMN17057680", "wgs_master": "JAEIJD000000000.1", "refseq_category": "reference genome", "taxid": "2795731", "species_taxid": "2795731", "organism_name": "Pontibaca salina", "infraspecific_name": "strain=S1109L", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/22", "asm_name": "ASM1630720v1", "asm_submitter": "Shandong University at Weihai", "gbrs_paired_asm": "GCA_016307205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/307/205/GCF_016307205.1_ASM1630720v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2934809", "genome_size_ungapped": "2934809", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016307205.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2851", "protein_coding_gene_count": "2772", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-22", "dateModified": "2020-12-22", "datePublished": "2020-12-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontibaca salina" ], "sample_taxid": [ "2795731" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.829 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2934809", "Number of Sequences": "41", "Longest Sequences (bp)": "542030", "N50 (bp)": "221932", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "2812", "Average Protein Length": "308.0", "Coding Ratio (%)": "88.5", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pontibaca salina", "strain": "strain=S1109L", "accession": "GCA_016307205.1", "taxid": 2795731, "species_taxid": 2795731, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 960, "total_fragments": 962, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pontibaca methylaminivorans", "strain": "strain=DSM 21219", "accession": "GCA_900156525.1", "taxid": 515897, "species_taxid": 515897, "relation_to_type": "type", "validated": true, "ani": 77.9299, "matched_fragments": 330, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 77.7876, "matched_fragments": 323, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.711, "matched_fragments": 298, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6286, "matched_fragments": 327, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium sediminis", "strain": "strain=S4J41", "accession": "GCA_004348975.1", "taxid": 2546227, "species_taxid": 2546227, "relation_to_type": "type", "validated": true, "ani": 77.4905, "matched_fragments": 320, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litoreus", "strain": "strain=DSM 28249", "accession": "GCA_900142765.1", "taxid": 1155722, "species_taxid": 1155722, "relation_to_type": "type", "validated": true, "ani": 77.4166, "matched_fragments": 255, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 77.3985, "matched_fragments": 277, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 77.3801, "matched_fragments": 275, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 77.2478, "matched_fragments": 228, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Primorskyibacter marinus", "strain": "strain=PX7", "accession": "GCA_003313245.1", "taxid": 1977320, "species_taxid": 1977320, "relation_to_type": "type", "validated": true, "ani": 77.2378, "matched_fragments": 221, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.2177, "matched_fragments": 254, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.2113, "matched_fragments": 253, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga dicentrarchi", "strain": "strain=YLY04", "accession": "GCA_003316635.1", "taxid": 2250573, "species_taxid": 2250573, "relation_to_type": "type", "validated": true, "ani": 77.1725, "matched_fragments": 245, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 77.1094, "matched_fragments": 264, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 77.0725, "matched_fragments": 149, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliishimia ponticola", "strain": "strain=MYP11", "accession": "GCA_004803475.1", "taxid": 2499833, "species_taxid": 2499833, "relation_to_type": "type", "validated": true, "ani": 77.0719, "matched_fragments": 202, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 76.9795, "matched_fragments": 203, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Primorskyibacter sedentarius", "strain": "strain=DSM 104836", "accession": "GCA_004342065.1", "taxid": 745311, "species_taxid": 745311, "relation_to_type": "type", "validated": true, "ani": 76.9269, "matched_fragments": 201, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter scottomollicae", "strain": "strain=DSM 25328", "accession": "GCA_003003215.1", "taxid": 483013, "species_taxid": 483013, "relation_to_type": "type", "validated": true, "ani": 76.8674, "matched_fragments": 192, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium confluentis", "strain": "strain=JSSK-17", "accession": "GCA_007923445.1", "taxid": 1958944, "species_taxid": 1958944, "relation_to_type": "type", "validated": true, "ani": 76.8271, "matched_fragments": 195, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 76.8172, "matched_fragments": 201, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 76.742, "matched_fragments": 147, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 76.6806, "matched_fragments": 154, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chachezhania sediminis", "strain": "strain=CAU 1508", "accession": "GCA_009765275.1", "taxid": 2599291, "species_taxid": 2599291, "relation_to_type": "type", "validated": true, "ani": 76.6249, "matched_fragments": 220, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016307205.1", "gtdb_species": "s__Pontibaca sp016307205", "ani": 100.0, "matched_fragments": 960, "total_fragments": 962, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pontibaca", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002786325.1", "gtdb_species": "s__Pseudooceanicola_C lipolyticus", "ani": 78.0304, "matched_fragments": 302, "total_fragments": 962, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudooceanicola_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900156525.1", "gtdb_species": "s__Pontibaca methylaminivorans", "ani": 77.9319, "matched_fragments": 331, "total_fragments": 962, "gtdb_taxonomy": 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