{ "type": "genome", "identifier": "GCF_016342785.1", "organism": "Sanguibacter suaedae", "title": "Sanguibacter suaedae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xinjiang Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016342785.1", "bioproject": "PRJNA224116", "biosample": "SAMN17081354", "wgs_master": "JAEINH000000000.1", "refseq_category": "reference genome", "taxid": "2795737", "species_taxid": "2795737", "organism_name": "Sanguibacter suaedae", "infraspecific_name": "strain=YZGR15", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/23", "asm_name": "ASM1634278v1", "asm_submitter": "Xinjiang Normal University", "gbrs_paired_asm": "GCA_016342785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/342/785/GCF_016342785.1_ASM1634278v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3163336", "genome_size_ungapped": "3163246", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016342785.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "2963", "protein_coding_gene_count": "2894", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-23", "dateModified": "2020-12-23", "datePublished": "2020-12-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Sanguibacter suaedae" ], "sample_taxid": [ "2795737" ], "sample_host_organism": [ "Suaeda aralocaspica" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Sanguibacter inulinus", "strain": "strain=DSM 100099", "accession": "GCA_013415325.1", "taxid": 60922, "species_taxid": 60922, "relation_to_type": "type", "validated": true, "ani": 80.6052, "matched_fragments": 589, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter gelidistatuariae", "strain": "strain=ISLP-3", "accession": "GCA_900096585.1", "taxid": 1814289, "species_taxid": 1814289, "relation_to_type": "type", "validated": true, "ani": 80.3963, "matched_fragments": 563, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 79.6569, "matched_fragments": 486, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=JCM3160", "accession": "GCA_004121315.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 79.6451, "matched_fragments": 472, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium marinum", "strain": "strain=NBRC 110994", "accession": "GCA_020551945.1", "taxid": 1638992, "species_taxid": 1638992, "relation_to_type": "type", "validated": true, "ani": 79.5669, "matched_fragments": 518, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 79.5423, "matched_fragments": 498, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavimobilis marinus", "strain": "strain=CGMCC 1.3457", "accession": "GCA_014653315.1", "taxid": 285351, "species_taxid": 285351, "relation_to_type": "type", "validated": true, "ani": 79.516, "matched_fragments": 462, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 79.5042, "matched_fragments": 490, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavimobilis marinus", "strain": "strain=DSM 19083", "accession": "GCA_900113055.1", "taxid": 285351, "species_taxid": 285351, "relation_to_type": "type", "validated": true, "ani": 79.4495, "matched_fragments": 467, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=NRRL B-8019", "accession": "GCA_000718325.1", "taxid": 1713, "species_taxid": 1713, 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78.7185, "matched_fragments": 425, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 78.6606, "matched_fragments": 447, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016342785.1", "gtdb_species": "s__Sanguibacter sp016342785", "ani": 100.0, "matched_fragments": 1043, "total_fragments": 1043, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Sanguibacter", "suaedae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }