{ "type": "genome", "identifier": "GCF_016401385.1", "organism": "Fictibacillus halophilus", "title": "Fictibacillus halophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-Sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016401385.1", "bioproject": "PRJNA224116", "biosample": "SAMN16951510", "wgs_master": "JAEACF000000000.1", "refseq_category": "reference genome", "taxid": "1610490", "species_taxid": "1610490", "organism_name": "Fictibacillus halophilus", "infraspecific_name": "strain=KCTC 33758", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/25", "asm_name": "ASM1640138v1", "asm_submitter": "Sun Yat-Sen University", "gbrs_paired_asm": "GCA_016401385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/401/385/GCF_016401385.1_ASM1640138v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3922063", "genome_size_ungapped": "3922063", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016401385.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4056", "protein_coding_gene_count": "3939", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-25", "dateModified": "2020-12-25", "datePublished": "2020-12-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Fictibacillus halophilus" ], "sample_taxid": [ "1610490" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "1.113 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3922063", "Number of Sequences": "9", "Longest Sequences (bp)": "3382482", "N50 (bp)": "3382482", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.3", "Number of CDSs": "4001", "Average Protein Length": "282.2", "Coding Ratio (%)": "86.4", "Number of rRNAs": "5", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fictibacillus halophilus", "strain": "strain=KCTC 33758", "accession": "GCA_016401385.1", "taxid": 1610490, "species_taxid": 1610490, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1304, "total_fragments": 1304, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Fictibacillus norfolkensis", "strain": "strain=Sa2CUA10", "accession": "GCA_014836645.1", "taxid": 2762233, "species_taxid": 2762233, "relation_to_type": "type", "validated": true, "ani": 90.6027, "matched_fragments": 1122, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus barbaricus", "strain": "strain=DSM 14730", "accession": "GCA_017052555.1", "taxid": 182136, "species_taxid": 182136, "relation_to_type": "type", "validated": true, "ani": 82.2315, "matched_fragments": 760, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus barbaricus", "strain": "strain=CCM 4982", "accession": "GCA_014635025.1", "taxid": 182136, "species_taxid": 182136, "relation_to_type": "type", "validated": true, "ani": 82.2031, "matched_fragments": 767, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus arsenicus", "strain": "strain=Con a/3", "accession": "GCA_001999465.1", "taxid": 255247, "species_taxid": 255247, "relation_to_type": "type", "validated": true, "ani": 81.1213, "matched_fragments": 648, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus aquaticus", "strain": "strain=GDSW-R2A3", "accession": "GCA_002245695.1", "taxid": 2021314, "species_taxid": 2021314, "relation_to_type": "type", "validated": true, "ani": 78.0194, "matched_fragments": 173, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus solisalsi", "strain": "strain=CGMCC 1.6854", "accession": "GCA_900103485.1", "taxid": 459525, "species_taxid": 459525, "relation_to_type": "type", "validated": true, "ani": 77.814, "matched_fragments": 109, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus enclensis", "strain": "strain=NIO-1003", "accession": "GCA_900094955.1", "taxid": 1017270, "species_taxid": 1017270, "relation_to_type": "type", "validated": true, "ani": 77.7728, "matched_fragments": 105, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus enclensis", "strain": "strain=NIO-1003", "accession": "GCA_001457035.1", "taxid": 1017270, "species_taxid": 1017270, "relation_to_type": "type", "validated": true, "ani": 77.7728, "matched_fragments": 105, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016401385.1", "gtdb_species": "s__Fictibacillus halophilus", "ani": 100.0, "matched_fragments": 1304, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007673525.1", "gtdb_species": "s__Fictibacillus phosphorivorans_C", "ani": 91.3929, "matched_fragments": 1167, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.18", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017052515.1", "gtdb_species": "s__Fictibacillus nanhaiensis_B", "ani": 90.622, "matched_fragments": 1135, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014836645.1", "gtdb_species": "s__Fictibacillus sp014836645", "ani": 90.6027, "matched_fragments": 1122, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016401345.1", "gtdb_species": "s__Fictibacillus nanhaiensis_A", "ani": 90.571, "matched_fragments": 1126, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.66", "min_intra_species_ani": "97.26", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_005503015.1", "gtdb_species": "s__Fictibacillus sp005503015", "ani": 90.2421, "matched_fragments": 1162, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001629705.1", "gtdb_species": "s__Fictibacillus phosphorivorans_A", "ani": 90.0281, "matched_fragments": 1151, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.31", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.202, "cell_length": 0.447, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 33.714, "optimum_ph": 7.633, "genome_size": 4239625.0, "gc_content": 40.195, "coding_genes": 4073.0, "rRNA16S_genes": 7.0, "tRNA_genes": 61.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.833, "range_salinity": null, "facultative_respiration": 0.375, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.625, "mesophilic_range_tmp": 0.5, "thermophilic_range_tmp": 0.5, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Fictibacillus", "halophilus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }