{ "type": "genome", "identifier": "GCF_016424485.1", "organism": "Paenibacillus roseus", "title": "Paenibacillus roseus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016424485.1", "bioproject": "PRJNA224116", "biosample": "SAMN17125825", "wgs_master": "JAELUP000000000.1", "refseq_category": "reference genome", "taxid": "2798579", "species_taxid": "2798579", "organism_name": "Paenibacillus roseus", "infraspecific_name": "strain=MAHUQ-46", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/28", "asm_name": "ASM1642448v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_016424485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/424/485/GCF_016424485.1_ASM1642448v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5367904", "genome_size_ungapped": "5367268", "gc_percent": "48.500000", "replicon_count": "0", "scaffold_count": "118", "contig_count": "118", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016424485.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "4824", "protein_coding_gene_count": "4620", "non_coding_gene_count": "101", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-28", "dateModified": "2020-12-28", "datePublished": "2020-12-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus roseus" ], "sample_taxid": [ "2798579" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Anseong-si" ], "sample_host_location_id": [], "data_size": "1.536 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 15.58, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5367904", "Number of Sequences": "118", "Longest Sequences (bp)": "939306", "N50 (bp)": "178747", "Gap Ratio (%)": "0.011848", "GCcontent (%)": "48.4", "Number of CDSs": "4760", "Average Protein Length": "317.5", "Coding Ratio (%)": "84.5", "Number of rRNAs": "8", "Number of tRNAs": "119", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus roseus", "strain": "strain=MAHUQ-46", "accession": "GCA_016424485.1", "taxid": 2798579, "species_taxid": 2798579, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1734, "total_fragments": 1737, 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