{ "type": "genome", "identifier": "GCF_016427565.1", "organism": "Microvirga splendida", "title": "Microvirga splendida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016427565.1", "bioproject": "PRJNA224116", "biosample": "SAMN17057235", "wgs_master": "JAELXT000000000.1", "refseq_category": "reference genome", "taxid": "2795727", "species_taxid": "2795727", "organism_name": "Microvirga splendida", "infraspecific_name": "strain=BT325", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/28", "asm_name": "ASM1642756v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_016427565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/427/565/GCF_016427565.1_ASM1642756v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5200315", "genome_size_ungapped": "5200315", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "62", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016427565.1-RS_2024_05_07", "annotation_date": "2024-05-07", "total_gene_count": "4944", "protein_coding_gene_count": "4812", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-28", "dateModified": "2020-12-28", "datePublished": "2020-12-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Microvirga splendida" ], "sample_taxid": [ "2795727" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Uijeongbu" ], "sample_host_location_id": [], "data_size": "1.452 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5200315", "Number of Sequences": "62", "Longest Sequences (bp)": "438022", "N50 (bp)": "144833", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.3", "Number of CDSs": "4969", "Average Protein Length": "302.5", "Coding Ratio (%)": "86.7", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microvirga splendida", "strain": "strain=BT325", "accession": "GCA_016427565.1", "taxid": 2795727, "species_taxid": 2795727, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1698, "total_fragments": 1702, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microvirga arabica", "strain": "strain=SV2184P", "accession": "GCA_016811235.1", "taxid": 1128671, "species_taxid": 1128671, "relation_to_type": "type", "validated": true, "ani": 88.8386, "matched_fragments": 1216, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga soli", "strain": "strain=R491", "accession": "GCA_016734765.1", "taxid": 1854496, "species_taxid": 1854496, "relation_to_type": "type", "validated": true, "ani": 87.7828, "matched_fragments": 1278, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flocculans", "strain": "strain=ATCC BAA-817", "accession": "GCA_000518665.1", "taxid": 217168, "species_taxid": 217168, "relation_to_type": "type", "validated": true, "ani": 85.205, "matched_fragments": 939, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga mediterraneensis", "strain": "strain=Marseille-Q2068", "accession": "GCA_013520865.1", "taxid": 2754695, "species_taxid": 2754695, "relation_to_type": "type", "validated": true, "ani": 84.9525, "matched_fragments": 1056, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga aerilata", "strain": "strain=5420S-16", "accession": "GCA_016743775.1", "taxid": 670292, "species_taxid": 670292, "relation_to_type": "type", "validated": true, "ani": 84.934, "matched_fragments": 1061, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga ossetica", "strain": "strain=V5/3M", "accession": "GCA_002741015.1", "taxid": 1882682, "species_taxid": 1882682, "relation_to_type": "type", "validated": true, "ani": 84.7343, "matched_fragments": 1115, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga zambiensis", "strain": "strain=WSM3693", "accession": "GCA_016735695.1", "taxid": 1402137, "species_taxid": 1402137, "relation_to_type": "type", "validated": true, "ani": 84.5389, "matched_fragments": 1070, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lotononidis", "strain": "strain=WSM3557", "accession": "GCA_000262405.1", "taxid": 864069, "species_taxid": 864069, "relation_to_type": "type", "validated": true, "ani": 84.5036, "matched_fragments": 1089, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga roseola", "strain": "strain=SM2", "accession": "GCA_020866965.1", "taxid": 2883126, "species_taxid": 2883126, "relation_to_type": "type", "validated": true, "ani": 83.321, "matched_fragments": 928, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga pakistanensis", "strain": "strain=NCCP-1258", "accession": "GCA_004458765.1", "taxid": 1682650, 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