{
    "type": "genome",
    "identifier": "GCF_016458825.1",
    "organism": "Miniphocaeibacter halophilus",
    "title": "Miniphocaeibacter halophilus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Swedish University of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016458825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17134891",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2931922",
        "species_taxid": "2931922",
        "organism_name": "Miniphocaeibacter halophilus",
        "infraspecific_name": "strain=AMB_01",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/03",
        "asm_name": "ASM1645882v1",
        "asm_submitter": "Swedish University of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_016458825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/458/825/GCF_016458825.1_ASM1645882v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2394777",
        "genome_size_ungapped": "2394777",
        "gc_percent": "29.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016458825.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2405",
        "protein_coding_gene_count": "2320",
        "non_coding_gene_count": "60",
        "pubmed_id": "35312473"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-03",
    "dateModified": "2021-01-03",
    "datePublished": "2021-01-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Miniphocaeibacter halophilus"
        ],
        "sample_taxid": [
            "2931922"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden: Uppsala"
        ],
        "sample_host_location_id": [],
        "data_size": "0.648 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2394777",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2394777",
        "N50 (bp)": "2394777",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.0",
        "Number of CDSs": "2380",
        "Average Protein Length": "301.1",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "12",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
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            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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            {
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Finegoldia magna",
                "strain": "strain=FDAARGOS_1593",
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                "species_taxid": 1260,
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                "matched_fragments": 50,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tissierella praeacuta",
                "strain": "strain=DSM 18095",
                "accession": "GCA_900128955.1",
                "taxid": 43131,
                "species_taxid": 43131,
                "relation_to_type": "type",
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                "ani": 75.2661,
                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Terrisporobacter glycolicus",
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                "accession": "GCA_000439105.1",
                "taxid": 36841,
                "species_taxid": 36841,
                "relation_to_type": "suspected-type",
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                "ani": 74.9464,
                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaeromonas gelatinilytica",
                "strain": "strain=D2Q-14",
                "accession": "GCA_016820635.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Terrisporobacter glycolicus",
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                "accession": "GCA_000373865.1",
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                "relation_to_type": "suspected-type",
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                "matched_fragments": 55,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
            {
                "accession": "GCA_016458825.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Miniphocibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Miniphocibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_000214475.1",
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            },
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        ]
    },
    "_bac2feature": {
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        "facultative_respiration": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
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        "halophilus"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}