{ "type": "genome", "identifier": "GCF_016469335.1", "organism": "Flocculibacter collagenilyticus", "title": "Flocculibacter collagenilyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "State Key Laboratory of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016469335.1", "bioproject": "PRJNA224116", "biosample": "SAMN15228905", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2744479", "species_taxid": "2744479", "organism_name": "Flocculibacter collagenilyticus", "infraspecific_name": "strain=SM1988", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/04", "asm_name": "ASM1646933v1", "asm_submitter": "State Key Laboratory of Microbial Technology", "gbrs_paired_asm": "GCA_016469335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/469/335/GCF_016469335.1_ASM1646933v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3973578", "genome_size_ungapped": "3973578", "gc_percent": "40.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016469335.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3480", "protein_coding_gene_count": "3355", "non_coding_gene_count": "105", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-04", "dateModified": "2021-01-04", "datePublished": "2021-01-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Flocculibacter collagenilyticus" ], "sample_taxid": [ "2744479" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.124 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3973578", "Number of Sequences": "1", "Longest Sequences (bp)": "3973578", "N50 (bp)": "3973578", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.0", "Number of CDSs": "3400", "Average Protein Length": "341.8", "Coding Ratio (%)": "87.7", "Number of rRNAs": "19", "Number of tRNAs": "81", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flocculibacter collagenilyticus", "strain": "strain=SM1988", "accession": "GCA_016469335.1", "taxid": 2744479, "species_taxid": 2744479, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1323, "total_fragments": 1324, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudoalteromonas phenolica", "strain": "strain=KCTC 12086", "accession": "GCA_001444405.1", "taxid": 161398, "species_taxid": 161398, "relation_to_type": "suspected-type", "validated": true, "ani": 79.022, "matched_fragments": 81, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas phenolica", "strain": "strain=O-BC30", "accession": "GCA_014925335.1", "taxid": 161398, "species_taxid": 161398, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9432, "matched_fragments": 82, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas piscicida", "strain": "strain=JCM 20779", "accession": "GCA_000238315.4", "taxid": 43662, "species_taxid": 43662, "relation_to_type": "type", "validated": true, "ani": 78.5844, "matched_fragments": 85, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella psychromarinicola", "strain": "strain=M2", "accession": "GCA_003855155.1", "taxid": 2487742, "species_taxid": 2487742, "relation_to_type": "type", "validated": true, "ani": 78.1261, "matched_fragments": 61, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas citrea", "strain": "strain=DSM 8771", "accession": "GCA_000238375.4", "taxid": 43655, "species_taxid": 43655, "relation_to_type": "type", "validated": true, "ani": 78.1203, "matched_fragments": 89, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas arctica", "strain": "strain=A 37-1-2", "accession": "GCA_000238395.4", "taxid": 394751, "species_taxid": 394751, "relation_to_type": "type", "validated": true, "ani": 77.9817, "matched_fragments": 92, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas espejiana", "strain": "strain=ATCC 29659", "accession": "GCA_002221525.1", "taxid": 28107, "species_taxid": 28107, "relation_to_type": "type", "validated": true, "ani": 77.9481, "matched_fragments": 100, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella japonica", "strain": "strain=KCTC 22435", "accession": "GCA_002075795.1", "taxid": 93973, "species_taxid": 93973, "relation_to_type": "type", "validated": true, "ani": 77.8876, "matched_fragments": 75, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas spongiae", "strain": "strain=UST010723-006", "accession": "GCA_000238255.4", "taxid": 298657, "species_taxid": 298657, "relation_to_type": "type", "validated": true, "ani": 77.8125, "matched_fragments": 112, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas aliena", "strain": "strain=SW19", "accession": "GCA_014905615.1", "taxid": 247523, "species_taxid": 247523, "relation_to_type": "type", "validated": true, "ani": 77.6188, "matched_fragments": 92, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas arabiensis", "strain": "strain=JCM 17292", "accession": "GCA_001550155.1", "taxid": 874454, "species_taxid": 874454, "relation_to_type": "type", "validated": true, "ani": 77.421, "matched_fragments": 97, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tunicata", "strain": "strain=D2", "accession": "GCA_000153245.1", "taxid": 314281, "species_taxid": 314281, "relation_to_type": "type", "validated": true, "ani": 77.3845, "matched_fragments": 104, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas piscicida", "strain": "strain=ATCC 15057", "accession": "GCA_000382005.1", "taxid": 43662, "species_taxid": 43662, "relation_to_type": "type", "validated": true, "ani": 77.3777, "matched_fragments": 78, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas phenolica", "strain": "strain=O-BC30", "accession": "GCA_004103265.1", "taxid": 161398, "species_taxid": 161398, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3556, "matched_fragments": 68, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas distincta", "strain": "strain=ATCC 700518", "accession": "GCA_000814675.1", "taxid": 77608, "species_taxid": 77608, "relation_to_type": "type", "validated": true, "ani": 77.3126, "matched_fragments": 85, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas espejiana", "strain": "strain=NBRC 102222", "accession": "GCA_007989585.1", "taxid": 28107, "species_taxid": 28107, "relation_to_type": "type", "validated": true, "ani": 76.9033, "matched_fragments": 88, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas profundi", "strain": "strain=CGMCC 1.15394", "accession": "GCA_014642695.1", "taxid": 1774956, "species_taxid": 1774956, "relation_to_type": "type", "validated": true, "ani": 76.8595, "matched_fragments": 77, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas fuliginea", "strain": "strain=KMM 216", "accession": "GCA_000690055.1", "taxid": 1872678, "species_taxid": 1872678, "relation_to_type": "type", "validated": true, "ani": 76.6652, "matched_fragments": 89, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas denitrificans", "strain": "strain=DSM 6059", "accession": "GCA_900112265.1", "taxid": 43656, "species_taxid": 43656, "relation_to_type": "type", "validated": true, "ani": 76.5526, "matched_fragments": 92, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella psychromarinicola", "strain": "strain=JCM 32090", "accession": "GCA_023283865.1", "taxid": 2487742, "species_taxid": 2487742, "relation_to_type": "type", "validated": true, "ani": 76.2238, "matched_fragments": 53, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016469335.1", "gtdb_species": "s__Flocculibacter collagenilyticus", "ani": 100.0, "matched_fragments": 1324, "total_fragments": 1324, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Flocculibacter", "ani_circumscription_radius": 95.0, 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