{ "type": "genome", "identifier": "GCF_016522075.1", "organism": "Mucilaginibacter segetis", "title": "Mucilaginibacter segetis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyungpook National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016522075.1", "bioproject": "PRJNA224116", "biosample": "SAMN16954022", "wgs_master": "JAEHFW000000000.1", "refseq_category": "reference genome", "taxid": "2793071", "species_taxid": "2793071", "organism_name": "Mucilaginibacter segetis", "infraspecific_name": "strain=SD-g", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/05", "asm_name": "ASM1652207v1", "asm_submitter": "Kyungpook National University", "gbrs_paired_asm": "GCA_016522075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/522/075/GCF_016522075.1_ASM1652207v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4090065", "genome_size_ungapped": "4090065", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016522075.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3721", "protein_coding_gene_count": "3670", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-05", "dateModified": "2021-01-05", "datePublished": "2021-01-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter segetis" ], "sample_taxid": [ "2793071" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.157 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4090065", "Number of Sequences": "7", "Longest Sequences (bp)": "2088205", "N50 (bp)": "2088205", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.6", "Number of CDSs": "3630", "Average Protein Length": "339.7", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter segetis", "strain": "strain=SD-g", "accession": "GCA_016522075.1", "taxid": 2793071, "species_taxid": 2793071, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1360, "total_fragments": 1360, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=DSM 100995", "accession": "GCA_014196695.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 78.1293, "matched_fragments": 401, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 78.0882, "matched_fragments": 396, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=CCM 8625", "accession": "GCA_014635525.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 78.0854, "matched_fragments": 402, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 78.0766, "matched_fragments": 405, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 77.9109, "matched_fragments": 346, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pankratovii", "strain": "strain=ZT4R22", "accession": "GCA_014773265.1", "taxid": 2772110, "species_taxid": 2772110, "relation_to_type": "type", "validated": true, "ani": 77.8814, "matched_fragments": 399, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 77.8263, "matched_fragments": 376, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 77.625, "matched_fragments": 301, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.5273, "matched_fragments": 323, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", "taxid": 652787, "species_taxid": 652787, "relation_to_type": "type", "validated": true, "ani": 77.5087, "matched_fragments": 247, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrenus", "strain": "strain=ZH6", "accession": "GCA_003432065.1", "taxid": 2482727, "species_taxid": 2482727, "relation_to_type": "type", "validated": true, "ani": 77.4945, "matched_fragments": 260, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 77.4942, "matched_fragments": 295, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ANJLi2", "accession": "GCA_014200545.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.4226, "matched_fragments": 281, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter inviolabilis", "strain": "strain=HC2", "accession": "GCA_011089895.1", "taxid": 2714892, "species_taxid": 2714892, "relation_to_type": "type", "validated": true, "ani": 77.4175, "matched_fragments": 312, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=CECT 8628", "accession": "GCA_014191635.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 77.4116, "matched_fragments": 254, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter corticis", "strain": "strain=MAH-19", "accession": "GCA_007558865.1", "taxid": 2597670, "species_taxid": 2597670, "relation_to_type": "type", "validated": true, "ani": 77.4059, "matched_fragments": 229, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ATCC BAA-1855", "accession": "GCA_900155965.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.4015, "matched_fragments": 284, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=SA3-7", "accession": "GCA_002355435.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 77.3813, "matched_fragments": 253, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter kameinonensis", "strain": "strain=SCK", "accession": "GCA_003675385.1", "taxid": 452286, "species_taxid": 452286, "relation_to_type": "type", "validated": true, "ani": 77.3745, "matched_fragments": 262, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter frigoritolerans", "strain": "strain=ATCC BAA-1854", "accession": "GCA_007830615.1", "taxid": 652788, "species_taxid": 652788, "relation_to_type": "type", "validated": true, "ani": 77.3016, "matched_fragments": 255, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter robiniae", "strain": "strain=F39-2", "accession": "GCA_012849215.1", "taxid": 2728022, "species_taxid": 2728022, "relation_to_type": "type", "validated": true, "ani": 76.9627, "matched_fragments": 116, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter frigoris", "strain": "strain=RP-3-15", "accession": "GCA_005116445.1", "taxid": 2571272, "species_taxid": 2571272, "relation_to_type": "type", "validated": true, "ani": 76.8401, "matched_fragments": 51, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 76.8052, "matched_fragments": 179, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter aquae", "strain": "strain=CJ43", "accession": "GCA_008195825.1", "taxid": 2605747, "species_taxid": 2605747, "relation_to_type": "type", "validated": true, "ani": 76.531, "matched_fragments": 50, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016522075.1", "gtdb_species": "s__Mucilaginibacter segetis", "ani": 100.0, "matched_fragments": 1360, "total_fragments": 1360, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_005938025.2", "gtdb_species": "s__Mucilaginibacter sp005938025", "ani": 78.4502, "matched_fragments": 413, "total_fragments": 1360, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010093045.1", "gtdb_species": "s__Mucilaginibacter sp010093045", "ani": 78.2193, "matched_fragments": 410, "total_fragments": 1360, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.64", "min_intra_species_ani": "95.64", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003635105.1", "gtdb_species": "s__Mucilaginibacter sp003635105", "ani": 78.2121, "matched_fragments": 380, "total_fragments": 1360, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001636615.1", "gtdb_species": "s__Mucilaginibacter sp001636615", "ani": 78.176, "matched_fragments": 401, "total_fragments": 1360, "gtdb_taxonomy": 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