{ "type": "genome", "identifier": "GCF_016522505.1", "organism": "Leucobacter chromiisoli", "title": "Leucobacter chromiisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sichuan university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016522505.1", "bioproject": "PRJNA224116", "biosample": "SAMN17083386", "wgs_master": "JAEHOH000000000.1", "refseq_category": "reference genome", "taxid": "2796471", "species_taxid": "2796471", "organism_name": "Leucobacter chromiisoli", "infraspecific_name": "strain=CSA1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/05", "asm_name": "ASM1652250v1", "asm_submitter": "Sichuan university", "gbrs_paired_asm": "GCA_016522505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/522/505/GCF_016522505.1_ASM1652250v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3350871", "genome_size_ungapped": "3350871", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016522505.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "3147", "protein_coding_gene_count": "3063", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-05", "dateModified": "2021-01-05", "datePublished": "2021-01-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter chromiisoli" ], "sample_taxid": [ "2796471" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.897 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3350871", "Number of Sequences": "42", "Longest Sequences (bp)": "501933", "N50 (bp)": "153969", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "3125", "Average Protein Length": "327.1", "Coding Ratio (%)": "91.5", "Number of rRNAs": "4", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter chromiisoli", "strain": "strain=CSA1", "accession": "GCA_016522505.1", "taxid": 2796471, "species_taxid": 2796471, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1092, "total_fragments": 1096, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", "taxid": 491918, "species_taxid": 491918, "relation_to_type": "type", "validated": true, "ani": 82.4709, "matched_fragments": 558, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 82.0201, "matched_fragments": 566, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter ruminantium", "strain": "strain=A2", "accession": "GCA_017565705.1", "taxid": 1289170, "species_taxid": 1289170, "relation_to_type": "type", "validated": true, "ani": 81.6863, "matched_fragments": 568, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter celer subsp. astrifaciens", "strain": "strain=CBX151", "accession": "GCA_001273835.1", "taxid": 1461260, "species_taxid": 668625, "relation_to_type": "type", "validated": true, "ani": 81.4676, "matched_fragments": 575, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=JG 31", "accession": "GCA_000231305.1", "taxid": 1079994, "species_taxid": 1079994, "relation_to_type": "type", "validated": true, "ani": 81.4118, "matched_fragments": 532, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter zeae", "strain": "strain=CC-MF41", "accession": "GCA_016758175.1", "taxid": 1257004, "species_taxid": 1257004, "relation_to_type": "type", "validated": true, "ani": 81.3815, "matched_fragments": 549, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=DSM 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