{
    "type": "genome",
    "identifier": "GCF_016583505.1",
    "organism": "Rhodovibrio salinarum",
    "title": "Rhodovibrio salinarum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "GEOMAR Helmholtz Centre for Ocean Research Kiel",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016583505.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07535029",
        "wgs_master": "NRRE00000000.1",
        "refseq_category": "na",
        "taxid": "1087",
        "species_taxid": "1087",
        "organism_name": "Rhodovibrio salinarum",
        "infraspecific_name": "strain=DSM 9154",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/08",
        "asm_name": "ASM1658350v1",
        "asm_submitter": "GEOMAR Helmholtz Centre for Ocean Research Kiel",
        "gbrs_paired_asm": "GCA_016583505.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/583/505/GCF_016583505.1_ASM1658350v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4148682",
        "genome_size_ungapped": "4148386",
        "gc_percent": "66.000000",
        "replicon_count": "0",
        "scaffold_count": "35",
        "contig_count": "35",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016583505.1-RS_2024_07_21",
        "annotation_date": "2024-07-21",
        "total_gene_count": "3845",
        "protein_coding_gene_count": "3740",
        "non_coding_gene_count": "53",
        "pubmed_id": "33375353"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-08",
    "dateModified": "2021-01-08",
    "datePublished": "2021-01-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodovibrio salinarum"
        ],
        "sample_taxid": [
            "1087"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Portugal: at Alcochete"
        ],
        "sample_host_location_id": [],
        "data_size": "1.151 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4148682",
        "Number of Sequences": "35",
        "Longest Sequences (bp)": "897751",
        "N50 (bp)": "232558",
        "Gap Ratio (%)": "0.007159",
        "GCcontent (%)": "66.0",
        "Number of CDSs": "3810",
        "Average Protein Length": "317.6",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rhodovibrio salinarum",
                "strain": "strain=DSM 9154",
                "accession": "GCA_016583505.1",
                "taxid": 1087,
                "species_taxid": 1087,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1365,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhodovibrio salinarum",
                "strain": "strain=DSM 9154",
                "accession": "GCA_000515255.1",
                "taxid": 1087,
                "species_taxid": 1087,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9959,
                "matched_fragments": 1365,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhodovibrio sodomensis",
                "strain": "strain=DSM 9895",
                "accession": "GCA_016583645.1",
                "taxid": 1088,
                "species_taxid": 1088,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9625,
                "matched_fragments": 929,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferruginivarius sediminum",
                "strain": "strain=WD2A32",
                "accession": "GCA_003344765.1",
                "taxid": 2661937,
                "species_taxid": 2661937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4754,
                "matched_fragments": 421,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limimonas halophila",
                "strain": "strain=DSM 25584",
                "accession": "GCA_900100655.1",
                "taxid": 1082479,
                "species_taxid": 1082479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.248,
                "matched_fragments": 321,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tistlia consotensis",
                "strain": "strain=DSM 21585",
                "accession": "GCA_900188055.1",
                "taxid": 1321365,
                "species_taxid": 1321365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6733,
                "matched_fragments": 410,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelagibius marinus",
                "strain": "strain=NBU2595",
                "accession": "GCA_014925385.1",
                "taxid": 2762760,
                "species_taxid": 2762760,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4811,
                "matched_fragments": 312,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Skermanella pratensis",
                "strain": "strain=W17",
                "accession": "GCA_008843145.1",
                "taxid": 2233999,
                "species_taxid": 2233999,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2819,
                "matched_fragments": 254,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Skermanella stibiiresistens",
                "strain": "strain=SB22",
                "accession": "GCA_000576635.1",
                "taxid": 913326,
                "species_taxid": 913326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.898,
                "matched_fragments": 277,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Minwuia thermotolerans",
                "strain": "strain=SY3-15",
                "accession": "GCA_002924445.1",
                "taxid": 2056226,
                "species_taxid": 2056226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8249,
                "matched_fragments": 207,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algihabitans albus",
                "strain": "strain=HHTR 118",
                "accession": "GCA_003572205.1",
                "taxid": 2164067,
                "species_taxid": 2164067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7493,
                "matched_fragments": 195,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Reyranella aquatilis",
                "strain": "strain=KCTC 52223",
                "accession": "GCA_020880995.1",
                "taxid": 2035356,
                "species_taxid": 2035356,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7204,
                "matched_fragments": 178,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nisaea acidiphila",
                "strain": "strain=MEBiC11861",
                "accession": "GCA_024662015.1",
                "taxid": 1862145,
                "species_taxid": 1862145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7147,
                "matched_fragments": 150,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas haemaphysalidis",
                "strain": "strain=546",
                "accession": "GCA_017355405.1",
                "taxid": 2768162,
                "species_taxid": 2768162,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6359,
                "matched_fragments": 156,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vineibacter terrae",
                "strain": "strain=CC-CFT640",
                "accession": "GCA_008039615.1",
                "taxid": 2586908,
                "species_taxid": 2586908,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5,
                "matched_fragments": 247,
                "total_fragments": 1366,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000515255.1",
                "gtdb_species": "s__Rhodovibrio salinarum",
                "ani": 99.9959,
                "matched_fragments": 1365,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Rhodovibrionaceae;g__Rhodovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016583645.1",
                "gtdb_species": "s__Rhodovibrio sodomensis",
                "ani": 84.9449,
                "matched_fragments": 930,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Rhodovibrionaceae;g__Rhodovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003344765.1",
                "gtdb_species": "s__Ferruginivarius sediminum",
                "ani": 78.4739,
                "matched_fragments": 420,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Rhodovibrionaceae;g__Ferruginivarius",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100655.1",
                "gtdb_species": "s__Limimonas halophila",
                "ani": 78.2362,
                "matched_fragments": 322,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Rhodovibrionaceae;g__Limimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_006969625.1",
                "gtdb_species": "s__Algihabitans sp006969625",
                "ani": 77.798,
                "matched_fragments": 371,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__DSM-21159;g__Algihabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900177295.1",
                "gtdb_species": "s__Tistlia consotensis",
                "ani": 77.6986,
                "matched_fragments": 414,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__DSM-21159;g__Tistlia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_007127165.1",
                "gtdb_species": "s__SKZV01 sp007127165",
                "ani": 77.6526,
                "matched_fragments": 223,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Rhodovibrionaceae;g__SKZV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "99.10",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014925385.1",
                "gtdb_species": "s__WHTV01 sp014925385",
                "ani": 77.4908,
                "matched_fragments": 311,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Kiloniellaceae;g__WHTV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009377535.1",
                "gtdb_species": "s__WHTV01 sp009377535",
                "ani": 77.3847,
                "matched_fragments": 287,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Kiloniellaceae;g__WHTV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002924445.1",
                "gtdb_species": "s__Minwuia thermotolerans",
                "ani": 76.8361,
                "matched_fragments": 206,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Minwuiales;f__Minwuiaceae;g__Minwuia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.67",
                "min_intra_species_ani": "95.35",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016699855.1",
                "gtdb_species": "s__GCA-016699855 sp016699855",
                "ani": 76.718,
                "matched_fragments": 230,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__GCA-016699855",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014197915.1",
                "gtdb_species": "s__Rhodospira visakhapatnamensis",
                "ani": 76.6834,
                "matched_fragments": 182,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016869915.1",
                "gtdb_species": "s__CAIOSQ01 sp016869915",
                "ani": 76.4984,
                "matched_fragments": 180,
                "total_fragments": 1366,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__CACIAM-22H2;f__CACIAM-22H2;g__CAIOSQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.061,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4176424.0,
        "gc_content": 66.0,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Rhodovibrio",
        "salinarum"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}